☆24Aug 17, 2026Updated 2 months ago
Alternatives and similar repositories for RegFormer
Users that are interested in RegFormer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆14Apr 8, 2026Updated 6 months ago
- ☆18Dec 19, 2025Updated 10 months ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 3 years ago
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A reproducible Nextflow DSL2 framework for standardized deployment, execution, and evaluation of single-cell foundation models (scFMs) wi…☆11Sep 3, 2026Updated last month
- ☆27Nov 3, 2025Updated 11 months ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆17Jul 29, 2025Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆56Oct 31, 2024Updated 2 years ago
- R package for single-cell comparative regulatory analysis☆13Jun 26, 2021Updated 5 years ago
- A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders☆31Jul 1, 2024Updated 2 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆20Feb 23, 2026Updated 8 months ago
- Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"☆17Oct 4, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆23Sep 8, 2023Updated 3 years ago
- SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with a…☆17May 5, 2026Updated 5 months ago
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- A high-performance R package for single-cell genomics☆22Oct 5, 2026Updated 3 weeks ago
- ☆38Jul 27, 2026Updated 3 months ago
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- Awesome GRN enhanced AnnData toolkit☆13Feb 19, 2026Updated 8 months ago
- ☆15Aug 17, 2023Updated 3 years ago
- Explore the Hi-Cs☆12Jul 25, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Single cell foundation model with federated tabular learning☆41Aug 10, 2026Updated 2 months ago
- Tutorials for the Monod package, which fits CME models to sequencing data.☆16Mar 19, 2025Updated last year
- Scripts to reproduce analyses of tradeSeq paper.☆17Feb 5, 2020Updated 6 years ago
- ☆15Jul 24, 2024Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆125Mar 9, 2026Updated 7 months ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆24Oct 7, 2026Updated 3 weeks ago
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆39Oct 15, 2026Updated 2 weeks ago
- Reproducibility notebooks for scPoli☆25May 5, 2023Updated 3 years ago
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scPertEval — reference implementations of evaluation protocols (metrics) for single-cell perturbation studies☆16Sep 9, 2026Updated last month
- ☆14Sep 3, 2025Updated last year
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆169Apr 28, 2026Updated 6 months ago
- Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo☆23Jan 28, 2025Updated last year
- Multi-resolution Variational Inference☆10Oct 9, 2024Updated 2 years ago
- ☆86Jan 9, 2026Updated 9 months ago
- ☆16Apr 13, 2026Updated 6 months ago