zhanglabtools / STAGATE
Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
☆70Updated 3 years ago
Alternatives and similar repositories for STAGATE:
Users that are interested in STAGATE are comparing it to the libraries listed below
- ☆53Updated 4 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆43Updated last year
- ☆39Updated last year
- ☆55Updated 8 months ago
- ☆109Updated last year
- ☆32Updated 9 months ago
- overview of spatial datasets☆71Updated last year
- Identify spatial domain☆68Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆55Updated last year
- Cell clustering for spatial transcriptomics data with graph neural network☆59Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆35Updated 11 months ago
- Spatial-Linked Alignment Tool☆84Updated 3 months ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆26Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 8 months ago
- ☆10Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆20Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆17Updated last year
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆77Updated 9 months ago
- Bayesian Analytics for Spatial Segmentation☆25Updated 5 months ago
- ☆19Updated 7 months ago
- UniCell Deconvolve Paper☆10Updated last year
- ☆116Updated 2 years ago
- Multi-omics data analysis for rare population inference using single-cell graph transformer☆18Updated 4 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆87Updated 3 weeks ago
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆11Updated last year
- ☆12Updated 2 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆71Updated 3 weeks ago
- stPlus: reference-based enhancement of spatial transcriptomics☆18Updated last year