Alternatives and similar repositories for scMODAL

Users that are interested in scMODAL are comparing it to the libraries listed below

• suinleelab / contrastiveVI
  ☆56Updated last year
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆23Updated 8 months ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆33Updated 2 years ago
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 6 months ago
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆21Updated 3 months ago
• theislab / scTab
  ☆59Updated last year
• ArcInstitute / cell-load
  pytorch dataloaders for single-cell perturbation data
  ☆26Updated this week
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆79Updated 3 months ago
• jlakkis / sciPENN
  ☆18Updated 3 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆69Updated 2 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆41Updated 3 years ago
• vandijklab / CINEMA-OT
  ☆33Updated 4 months ago
• const-ae / linear_perturbation_prediction-Paper
  ☆49Updated last month
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆113Updated last year
• TencentAILabHealthcare / scTranslator
  ☆36Updated 3 weeks ago
• bowang-lab / DeepVelo
  ☆46Updated last year
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆15Updated 10 months ago
• JSB-UCLA / scDesign2
  An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated
  ☆25Updated 10 months ago
• YangLabHKUST / STitch3D
  Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices
  ☆66Updated last year
• xuyungang / scIGANs
  Generative adversarial networks for single-cell RNA-seq imputation
  ☆39Updated 5 years ago
• BioX-NKU / scButterfly
  A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders
  ☆23Updated last year
• HantaoShu / DeepSEM
  ☆85Updated 2 years ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆63Updated last year
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 2 years ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆102Updated 6 months ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆109Updated 11 months ago
• zcang / SpaOTsc
  ☆45Updated last month
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 11 months ago