Alternatives and similar repositories for SpaMTP

Users that are interested in SpaMTP are comparing it to the libraries listed below

• jcolinge / BulkSignalR
  BulkSignalR
  ☆26Updated 6 months ago
• TheHumphreysLab / Mouse_DKD_Rx_Atlas
  ☆16Updated 3 years ago
• olapuentesantana / easier
  R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq
  ☆15Updated 2 months ago
• marcovito / sma
  ☆15Updated 2 years ago
• cbib / Seurat-Integrate
  R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…
  ☆31Updated 5 months ago
• satijalab / Mixscale
  ☆24Updated 3 months ago
• BaderLab / MALAT1_threshold
  ☆15Updated 8 months ago
• CICAMS-Liu-lab / ECGEA
  ☆18Updated 4 years ago
• ventolab / Human-Gonadal-Development-Atlas_HGDA
  ☆21Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆32Updated last year
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• SydneyBioX / scFeatures
  ☆14Updated 2 weeks ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated 2 years ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆19Updated last year
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆18Updated last year
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆17Updated last year
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆24Updated 3 months ago
• chriscainx / gastric-cancer
  ☆16Updated 2 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆31Updated 3 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆48Updated last year
• ventolab / Human-Endometrial-Cell-Atlas_HECA
  Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.
  ☆30Updated last year
• 3254c / scSurv
  a deep generative model for single-cell survival analysis
  ☆15Updated 2 months ago
• olapuentesantana / easier_manuscript
  ☆16Updated 4 years ago
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆17Updated 5 months ago
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆38Updated 3 years ago
• soumelis-lab / ICELLNET
  ☆23Updated 7 months ago
• aifimmunology / aifi-healthy-pbmc-reference
  Assembly and Annotation of the Human Immune Health Atlas
  ☆20Updated 5 months ago
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆26Updated last year
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆45Updated last week
• wuaipinglab / scImmuCC
  Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.
  ☆10Updated last year