10XGenomics / cellranger-atac
☆18Updated 4 years ago
Alternatives and similar repositories for cellranger-atac:
Users that are interested in cellranger-atac are comparing it to the libraries listed below
- ☆18Updated last year
- ☆15Updated last year
- Toolkit for single-cell analysis of chromatin accessibility☆12Updated 4 years ago
- Example scripts for analyzing CUT&RUN datasets☆13Updated 6 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆45Updated 6 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated this week
- ☆20Updated last year
- Paired Insertion Counting for snATAC-seq data☆17Updated 6 months ago
- Pipeline for designing custom probes against human genes☆15Updated 3 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆18Updated 3 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 8 months ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Scripts used for the ACT paper☆12Updated 3 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆20Updated 5 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- ☆31Updated 9 months ago
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 9 months ago
- ☆16Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- scover☆23Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago