10XGenomics / cellranger-atac

Related projects ⓘ

Alternatives and complementary repositories for cellranger-atac

• ijuric / MAPS
  ☆18Updated last year
• urrutiag / destin
  Toolkit for single-cell analysis of chromatin accessibility
  ☆12Updated 4 years ago
• wenweixiong / MARVEL
  ☆40Updated 3 months ago
• Henikoff / scCUT-Tag
  ☆14Updated last year
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆14Updated last month
• MarioniLab / EmptyDrops2017
  Code for the empty droplet and cell detection project from the HCA Hackathon.
  ☆20Updated 5 years ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆15Updated 9 months ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆12Updated 2 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆16Updated 4 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated last year
• ma-compbio / Fast-Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition
  ☆17Updated last year
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated 11 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆17Updated 10 months ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 2 years ago
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆15Updated this week
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆29Updated 2 years ago
• Genentech / Isosceles
  The Isoforms from Single-Cell; Long-read Expression Suite
  ☆19Updated 2 months ago
• UPSUTER / GEMLI
  ☆27Updated 3 months ago
• jacobhepkema / scover
  scover
  ☆22Updated last year
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• crazyhottommy / pyflow-scATACseq
  snakemake workflow for post-processing scATACseq data
  ☆19Updated 4 years ago
• sarahhainer / uliCUT-RUN
  Example scripts for analyzing CUT&RUN datasets
  ☆13Updated 6 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆38Updated 2 years ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated 5 months ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆31Updated 3 years ago
• aslihankarabacak / FootprintPipeline
  Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets
  ☆12Updated 5 years ago
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆35Updated 3 years ago
• landau-lab / ONT-sc-splice
  Tools for detecting alternative splicing events and genotype in single-cell gene expression data.
  ☆13Updated 10 months ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆15Updated 2 years ago