10XGenomics / cellranger-atacLinks
☆22Updated 5 years ago
Alternatives and similar repositories for cellranger-atac
Users that are interested in cellranger-atac are comparing it to the libraries listed below
Sorting:
- ☆19Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- ☆18Updated last year
- Bead-based single-cell atac processing☆33Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- ☆53Updated last year
- An R package to time somatic mutations☆65Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆17Updated 7 years ago
- Chromatin States Map in mouse embryonic stem cell☆19Updated 7 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆12Updated 5 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated this week
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- ☆18Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated this week
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated 3 weeks ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆33Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated last month
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆17Updated 3 weeks ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18Updated 4 years ago
- Tutorial Website☆63Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last month
- ☆25Updated 3 months ago