10XGenomics / cellranger-atacLinks
☆22Updated 4 years ago
Alternatives and similar repositories for cellranger-atac
Users that are interested in cellranger-atac are comparing it to the libraries listed below
Sorting:
- ☆19Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated this week
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated 3 weeks ago
- ☆53Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆18Updated 2 years ago
- ☆17Updated 7 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Toolkit for single-cell analysis of chromatin accessibility☆12Updated 5 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆40Updated 4 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- ☆19Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Toolkit for single-cell copy number analysis☆26Updated 3 weeks ago
- ☆22Updated 2 years ago
- Tutorial Website☆61Updated 4 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated last year
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 7 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago