Alternatives and similar repositories for SpatialEx

Users that are interested in SpatialEx are comparing it to the libraries listed below

• GuangyuWangLab2021 / Loki
  A visual–omics foundation model to bridge histopathology with spatial transcriptomics
  ☆123Updated 7 months ago
• almaan / her2st
  Her2 Breast Cancer Project
  ☆92Updated 3 years ago
• SydneyBioX / GHIST
  ☆59Updated 3 months ago
• maxpmx / HisToGene
  PyTorch implementation of HisToGene
  ☆52Updated 4 years ago
• recolyce / HistoCell
  ☆50Updated 9 months ago
• BianChang / HEMIT-DATASET
  This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task
  ☆16Updated last year
• biomed-AI / Hist2ST
  ☆52Updated 3 years ago
• ZhicengShi / mclSTExp
  mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images
  ☆39Updated last year
• bowang-lab / BLEEP
  Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
  ☆83Updated last year
• ratschlab / HistoPlexer
  ☆27Updated 9 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆63Updated last year
• daviddaiweizhang / istar
  ☆157Updated last year
• Weiqin-Zhao / Hist2Cell
  ☆18Updated last month
• donghaifang / STMask
  ☆16Updated last year
• bryanhe / ST-Net
  Deep learning on histopathology images.
  ☆140Updated 4 years ago
• JiawenChenn / STimage-1K4M
  ☆78Updated 8 months ago
• Graph-and-Geometric-Learning / STPath
  STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images
  ☆35Updated 5 months ago
• ruitian-olivia / IGI-DL
  Code for ST_IGI package
  ☆34Updated 6 months ago
• fdu-wangfeilab / stDiff
  A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
  ☆25Updated last year
• Zhaocy-Research / TransformerST
  A Transformer Model Exploiting Histology Images and Spatial Gene Expression
  ☆22Updated 9 months ago
• wenwenmin / scstGCN
  [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…
  ☆25Updated last month
• loicchadoutaud / sCellST
  ☆14Updated 2 months ago
• AI4SCR / VirtualMultiplexer
  A generative toolkit to translate H&E images to multiplexed IHC
  ☆57Updated last year
• fuscc-deep-path / sc_MTOP
  sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…
  ☆44Updated 8 months ago
• BCV-Uniandes / SpaRED
  ☆14Updated 7 months ago
• yrjia1015 / THItoGene
  Code for the THItoGene
  ☆28Updated 9 months ago
• tanlabcode / CelloType
  ☆59Updated 10 months ago
• wenwenmin / HisToSGE
  High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)
  ☆20Updated last year
• JiangBioLab / DeepST
  Identify spatial domain
  ☆87Updated 7 months ago
• AIRMEC / HECTOR
  Multimodal deep learning to predict distant recurrence-free probability from digitized H&E tumour slide and tumour stage.
  ☆44Updated last year