FakeEnd / iDNA_ABFLinks
python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methylations
☆15Updated last year
Alternatives and similar repositories for iDNA_ABF
Users that are interested in iDNA_ABF are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- ☆24Updated last year
- ☆17Updated last year
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆12Updated 4 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 3 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 6 months ago
- Computational Optimization of DNA Activity (CODA)☆64Updated 6 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆48Updated last year
- ☆18Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆43Updated 3 weeks ago
- surrogate quantitative interpretability for deepnets☆24Updated 2 months ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆22Updated last week
- ☆21Updated 6 months ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- ☆14Updated 2 years ago
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆40Updated 2 weeks ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- Scripts for building computational models of gene regulation with tensorflow☆11Updated 5 years ago
- ☆24Updated last month
- For fine-tuning Enformer using paired WGS & gene expression data☆23Updated last month
- ☆33Updated 2 years ago
- ☆42Updated last week
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 11 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆15Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆78Updated last week
- Repository for the paper: "SPACE: STRING proteins as complementary embeddings"☆29Updated 3 weeks ago
- Toolset for training quantitative sequence to function models.☆23Updated last year