python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methylations
☆15May 6, 2024Updated 2 years ago
Alternatives and similar repositories for iDNA_ABF
Users that are interested in iDNA_ABF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆19Mar 3, 2025Updated last year
- ☆10May 16, 2020Updated 6 years ago
- ☆29Nov 7, 2023Updated 2 years ago
- Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.☆27Nov 3, 2022Updated 3 years ago
- ☆19Oct 21, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SGQuant: Squeezing the Last Bit on Graph Neural Networks with Specialized Quantization☆11Aug 12, 2020Updated 5 years ago
- Official implementation of JAMIE, Joint variational Autoencoders for Multimodal Imputation and Embedding☆16Sep 11, 2025Updated 10 months ago
- The code of "Deep Regression Representation Learning with Topology" in ICML 2024☆14Jul 4, 2024Updated 2 years ago
- ☆35Jan 14, 2025Updated last year
- Deep neural networks for predicting CpG methylation☆38Apr 11, 2017Updated 9 years ago
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- ☆12Jun 21, 2025Updated last year
- Cell2location paper - Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics☆15Nov 26, 2022Updated 3 years ago
- Rhetorical sentence classification using LLMs☆11Oct 26, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BoostDiff - Inference of differential networks from gene expression data☆13Jan 11, 2024Updated 2 years ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆775Jan 22, 2026Updated 6 months ago
- scDNAm-GPM: A Generative Language Mamba for Analyzing Single-Cell Whole-Genome Bisulfite Sequencing☆20Updated this week
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆33Oct 23, 2021Updated 4 years ago
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated 2 years ago
- Joint text classification on multiple levels with multiple labels, using a multi-head attention mechanism to wire two prediction tasks to…☆16Oct 17, 2020Updated 5 years ago
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆11Feb 10, 2024Updated 2 years ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆10Mar 19, 2020Updated 6 years ago
- Code to build models that effectively predict promoter-driven gene expression☆12May 15, 2025Updated last year
- An efficient tool for large-scale correlation network analysis☆15Dec 27, 2024Updated last year
- Code for "Fine-Tuned 'Small' LLMs (Still) Significantly Outperform Zero-Shot Generative AI Models in Text Classification", arXiv 2024☆15Jun 24, 2024Updated 2 years ago
- Official Pytorch implementation of TargetNet, Bioinformatics 2022☆14Apr 9, 2022Updated 4 years ago
- GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction☆13Jul 23, 2023Updated 3 years ago
- Identifying bioactive peptide function using multi-label deep learning☆10Jul 9, 2026Updated last month
- Modelling RBP binding preferences to predict RPB binding sites☆11Aug 11, 2023Updated 2 years ago
- Multi-Label Classification with Weighted Classifier Selection and Stacked Ensemble☆15Mar 30, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- ☆27Apr 15, 2025Updated last year
- Python implementation of closed frequent subgraph mining algorithm cgSpan. Only undirected graphs are currently supported.☆13Dec 20, 2021Updated 4 years ago
- Reproduce PyTorch implementation of the paper "Two-Stream Transformer for Multi-Label Image Classification" ACM MM 2022☆11Nov 21, 2022Updated 3 years ago
- P2PXML: Deep Geometric Framework to Predict Antibody-Antigen Binding Affinity (Journal of Structural Biology)☆14Feb 24, 2026Updated 5 months ago
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- Greedy Randomized Adaptive Search Procedure (GRASP) using Python☆10Nov 25, 2016Updated 9 years ago