FakeEnd / iDNA_ABF
python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methylations
☆12Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for iDNA_ABF
- ☆17Updated last year
- ☆16Updated 8 months ago
- ☆49Updated 2 months ago
- Computational Optimization of DNA Activity (CODA)☆41Updated 2 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆23Updated 8 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆31Updated this week
- ☆14Updated 4 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆19Updated this week
- ☆17Updated 2 weeks ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆19Updated last year
- ☆10Updated 2 years ago
- Toolset for training quantitative sequence to function models.☆20Updated 8 months ago
- Knowledge-primed neural networks☆34Updated last year
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆17Updated this week
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Updated last year
- ☆28Updated last year
- Code for reproducing the Sei manuscript results☆15Updated 2 years ago
- ☆14Updated 3 months ago
- ☆16Updated last month
- ExplaiNN: interpretable and transparent neural networks for genomics☆43Updated last year
- ☆24Updated last week
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆48Updated 2 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated last year
- Create cell sentences from sequencing data☆21Updated 3 months ago
- Materials and scripts for building cell type encyclopedia table☆15Updated 2 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆27Updated this week
- ☆28Updated 2 months ago
- single cell foundation model for Gene network inference and more☆27Updated last week
- ☆10Updated last year
- A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders☆15Updated 4 months ago