Moldia / Xenium_benchmarkingLinks
Code used to benchmark Xenium
☆66Updated last year
Alternatives and similar repositories for Xenium_benchmarking
Users that are interested in Xenium_benchmarking are comparing it to the libraries listed below
Sorting:
- ☆50Updated 3 months ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆62Updated 3 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆130Updated last week
- Join subcellular Visium HD bins into cells☆122Updated 4 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆132Updated 6 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆94Updated 3 months ago
- ☆124Updated last year
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- ☆59Updated last year
- TACCO: Transfer of Annotations to Cells and their COmbinations☆56Updated 2 weeks ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆78Updated 2 years ago
- ☆31Updated last month
- BANKSY: spatial clustering☆120Updated last month
- Spatially resolved transcriptomic analysis☆59Updated 2 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆94Updated 3 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated last month
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 7 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- Detect hierarchical structures in cell-cell communications☆15Updated 7 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆38Updated 6 months ago
- Spatial Cellular Estimator for Tumors☆57Updated 3 weeks ago
- Bayesian Analytics for Spatial Segmentation☆29Updated 4 months ago
- ☆125Updated 3 years ago
- ☆126Updated 4 months ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆25Updated last year
- End-to-end analysis of spatial multi-omics data☆93Updated last month
- ☆31Updated 6 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 2 months ago