Moldia / Xenium_benchmarkingLinks
Code used to benchmark Xenium
☆72Updated last year
Alternatives and similar repositories for Xenium_benchmarking
Users that are interested in Xenium_benchmarking are comparing it to the libraries listed below
Sorting:
- Join subcellular Visium HD bins into cells☆130Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆147Updated 2 weeks ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆107Updated 6 months ago
- ☆52Updated 2 months ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆71Updated 6 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- ☆127Updated last year
- BANKSY: spatial clustering☆130Updated 2 months ago
- ☆126Updated 3 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 3 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- ☆34Updated 2 months ago
- Spatial Cellular Estimator for Tumors☆60Updated this week
- Spatial mapping of cell types by integration of transcriptomics data☆99Updated 3 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆86Updated 3 years ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- ☆60Updated last year
- Detect hierarchical structures in cell-cell communications☆16Updated 11 months ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 5 months ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆15Updated 7 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 10 months ago
- ☆31Updated 10 months ago
- ☆129Updated last year
- Bayesian Analytics for Spatial Segmentation☆30Updated 7 months ago
- Spatially resolved transcriptomic analysis☆64Updated 3 years ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆26Updated 2 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 5 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆73Updated 11 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆47Updated 4 years ago