sunericd / SpatialAgingClock
☆17Updated 9 months ago
Alternatives and similar repositories for SpatialAgingClock:
Users that are interested in SpatialAgingClock are comparing it to the libraries listed below
- ☆10Updated last year
- Python implementation of Gene Trajectory☆25Updated 6 months ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆14Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆16Updated 9 months ago
- ☆9Updated 8 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 weeks ago
- Publically accessible code for DIISCO method☆10Updated 5 months ago
- ☆17Updated this week
- inferring regulatory cellular dynamics☆35Updated this week
- ☆21Updated 2 years ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆21Updated last month
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆39Updated 2 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆24Updated last month
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 4 months ago
- CAST package☆33Updated 5 months ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆18Updated 2 years ago
- ☆23Updated last month
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆20Updated 3 years ago
- Spatial transcriptomics of heart tissue☆20Updated 2 years ago
- Project bulk/single-cell RNA-seq data to given LSI space☆11Updated 3 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆18Updated last year
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated last month
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- ☆12Updated 11 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- ☆17Updated last year
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆16Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year