Alternatives and similar repositories for SpatialAgingClock

Users that are interested in SpatialAgingClock are comparing it to the libraries listed below

• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 8 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆21Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated this week
• kaizhang / single-cell-benchmark
  ☆10Updated 2 years ago
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆26Updated last year
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated 9 months ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• WanluLiuLab / scAtlasVAE
  ☆38Updated 2 months ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• swaruplabUCI / DSAD_Spatial_Miyoshi_Morabito_2024
  Code associated with the data analysis for Miyoshi & Morabito 2024
  ☆23Updated 2 months ago
• yunguan-wang / Spacia
  ☆30Updated 4 months ago
• sdentro / copykat_pipeline
  ☆13Updated last year
• Janezjz / cellanova
  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
  ☆50Updated 10 months ago
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆41Updated last month
• xiaoyeye / TFvelo
  ☆45Updated last year
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆40Updated last year
• kaifuchenlab / MEBOCOST
  ☆27Updated 2 weeks ago
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated 10 months ago
• theislab / neural_organoid_atlas
  Reproducibility repository for the Human Neural Organoid Atlas publication
  ☆39Updated 9 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 6 months ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆29Updated 2 years ago
• Teichlab / HCA_Heart_ver2
  ☆39Updated 2 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆88Updated 9 months ago
• Winnie09 / Lamian
  ☆56Updated 3 weeks ago
• AllonKleinLab / cospar
  ☆26Updated last year
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated last week
• KellisLab / AD_regulome_analysis
  AD regulome analysis
  ☆12Updated 2 years ago
• dyxmvp / Spatial_ATAC-seq
  ☆22Updated 2 years ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated last year
• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆21Updated 3 years ago