Alternatives and similar repositories for get_model

Users that are interested in get_model are comparing it to the libraries listed below

• calico / scBasset
  Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
  ☆98Updated 2 months ago
• Durenlab / LINGER
  ☆119Updated 6 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆154Updated 9 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆109Updated 2 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• madilabcode / scNET
  ☆58Updated 2 months ago
• snap-stanford / SATURN
  ☆145Updated last year
• TencentAILabHealthcare / scTranslator
  ☆62Updated 3 months ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆82Updated last year
• biomed-AI / CellFM
  ☆87Updated 3 months ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆65Updated last month
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆109Updated 2 years ago
• YosefLab / popV
  ☆84Updated this week
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆71Updated last year
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆60Updated last year
• jsxlei / SCALEX
  Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
  ☆79Updated 2 months ago
• kundajelab / chrombpnet
  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
  ☆192Updated 2 months ago
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆145Updated 2 years ago
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆156Updated this week
• lanagarmire / Asgard
  ☆44Updated last year
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆123Updated this week
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆69Updated 2 years ago
• sallyqus / awesome-AI4SingleCell
  Must-read papers on deep learning based methodology paper for single cell data analysis
  ☆19Updated 4 years ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆64Updated last year
• mcgilldinglab / UNAGI
  UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.
  ☆43Updated 3 weeks ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆113Updated last year
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆227Updated 5 months ago
• labomics / midas
  PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
  ☆61Updated this week
• buenrostrolab / scPrinter
  ☆55Updated 2 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆99Updated last month