GET-Foundation / get_modelLinks
A modular framework for multimodal cross-cell-type transcriptional regulation models
☆86Updated 2 weeks ago
Alternatives and similar repositories for get_model
Users that are interested in get_model are comparing it to the libraries listed below
Sorting:
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆98Updated 7 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆78Updated last year
- ☆112Updated 2 months ago
- code to run sei and obtain sei and sequence class predictions☆108Updated 2 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆103Updated 5 months ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆97Updated 5 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆138Updated 6 months ago
- ☆133Updated last year
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆59Updated 7 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆177Updated last month
- Transformer for One-Stop Interpretable Cell-type Annotation☆144Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- ☆70Updated 2 months ago
- ☆43Updated last year
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61Updated last year
- ☆44Updated 2 months ago
- Single-cell ATAC-seq analysis via Latent feature Extraction☆102Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆44Updated 9 months ago
- Must-read papers on deep learning based methodology paper for single cell data analysis☆18Updated 4 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆86Updated 10 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆59Updated 10 months ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆84Updated 3 years ago
- ☆50Updated last month
- Direct estimation of mean and covariance from single cell RNA seq experiments☆115Updated 3 months ago
- ☆36Updated 2 months ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated 2 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆70Updated last month
- ☆82Updated last week
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year