kaizhang / single-cell-benchmarkLinks
☆11Updated 2 years ago
Alternatives and similar repositories for single-cell-benchmark
Users that are interested in single-cell-benchmark are comparing it to the libraries listed below
Sorting:
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- R package IReNA☆29Updated last year
- ☆26Updated 9 months ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆23Updated 3 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆44Updated last year
- Code associated with the data analysis for Miyoshi & Morabito 2024☆26Updated 6 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- ☆32Updated last year
- ☆41Updated 7 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Updated 10 months ago
- ☆10Updated last year
- Whole mouse brain snATAC seq analysis☆29Updated 9 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- ☆56Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- SCENIC+ analyses☆18Updated 2 years ago
- Parse ArchR arrow files to anndata h5ad☆16Updated 2 years ago
- ☆13Updated 10 months ago
- single-cell Nucleosome Methylation Transcription☆15Updated 7 years ago
- ☆32Updated 6 months ago
- ☆17Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 4 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- ☆15Updated 2 years ago
- ☆21Updated last month
- Reproducibility notebooks for scPoli☆22Updated 2 years ago