Alternatives and similar repositories for single-cell-benchmark

Users that are interested in single-cell-benchmark are comparing it to the libraries listed below

• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 9 months ago
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated 11 months ago
• buenrostrolab / PRINT
  ☆19Updated 5 months ago
• xyang2uchicago / BioTIP
  BioTIP: Biological Tipping-Point Identification and Characterization
  ☆22Updated last week
• sunericd / SpatialAgingClock
  ☆24Updated 6 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated last month
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆23Updated last month
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 7 months ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last month
• WanluLiuLab / scAtlasVAE
  ☆39Updated 4 months ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated last year
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆41Updated last year
• SchubertLab / mvTCR
  ☆54Updated 11 months ago
• ChengxiangQiu / tome_code
  The scripts used for the analyses in TOME project
  ☆25Updated 11 months ago
• swaruplabUCI / DSAD_Spatial_Miyoshi_Morabito_2024
  Code associated with the data analysis for Miyoshi & Morabito 2024
  ☆24Updated 3 months ago
• Roy-lab / scMTNI
  ☆30Updated 3 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated last year
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated last month
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• zhouzilu / cTPnet
  cTPnet Package
  ☆26Updated 3 years ago
• ejarmand / comparative_epigenomic_motor_cortex
  ☆10Updated 10 months ago
• emiraldi / infTRN_lassoStARS
  Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS
  ☆15Updated 3 years ago
• shmohammadi86 / SCINET
  ☆18Updated 4 years ago
• viannegao / ChromaFold
  ☆30Updated last year
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 6 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆33Updated 6 months ago
• beyondpie / CEMBA_wmb_snATAC
  Whole mouse brain snATAC seq analysis
  ☆27Updated 6 months ago