kaizhang / single-cell-benchmarkLinks
☆10Updated last year
Alternatives and similar repositories for single-cell-benchmark
Users that are interested in single-cell-benchmark are comparing it to the libraries listed below
Sorting:
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- ☆23Updated 2 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- Code associated with the data analysis for Miyoshi & Morabito 2024☆17Updated 6 months ago
- ☆15Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆21Updated 3 weeks ago
- Computational pipeline to process EasySci-RNA data.☆20Updated last year
- ☆27Updated 5 months ago
- ☆11Updated 2 years ago
- R and MATLAB scripts for MAGICAL☆11Updated 11 months ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆13Updated 4 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.☆15Updated last month
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 2 years ago
- R package IReNA☆28Updated 6 months ago
- Whole mouse brain snATAC seq analysis☆26Updated last month
- Benchmark of GRNs using the GRETA pipeline☆24Updated 2 months ago
- The scripts used for the analyses in TOME project☆24Updated 6 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆10Updated 5 months ago
- Python implementation of Gene Trajectory☆25Updated 9 months ago
- ☆16Updated 10 months ago
- SCENIC+ analyses☆14Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated 2 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆34Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- ☆13Updated 2 months ago