☆12Sep 7, 2023Updated 2 years ago
Alternatives and similar repositories for single-cell-benchmark
Users that are interested in single-cell-benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Dec 15, 2023Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆27Sep 23, 2025Updated 10 months ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆17Feb 6, 2026Updated 6 months ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- ☆13Jan 23, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆27Apr 15, 2025Updated last year
- S-LDSC scripts for use on MR server.☆10Sep 23, 2021Updated 4 years ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19Aug 4, 2026Updated last week
- ☆14Mar 17, 2022Updated 4 years ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated last year
- ☆14Jul 22, 2025Updated last year
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 2 years ago
- ☆13Sep 30, 2024Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆82Jul 9, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆15Jan 28, 2023Updated 3 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated 2 years ago
- ☆18Jul 3, 2022Updated 4 years ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆27Mar 7, 2024Updated 2 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- ☆13Jan 12, 2022Updated 4 years ago
- Collaborative genetic studies of idiopathic pulmonary fibrosis☆22Jul 17, 2026Updated 3 weeks ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Toolkit for single-cell copy number analysis☆35Dec 15, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 6 years ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆13Dec 4, 2023Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆21Sep 24, 2019Updated 6 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆35Jan 5, 2026Updated 7 months ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆26Mar 26, 2026Updated 4 months ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆21Oct 7, 2021Updated 4 years ago
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆27Mar 4, 2024Updated 2 years ago
- ☆11Feb 1, 2024Updated 2 years ago
- University of Cambridge PhD thesis☆17Jan 8, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 3 years ago
- Fine-grained Spatial Transcriptomics by integrating paired histology image☆35Aug 7, 2026Updated last week
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆27Oct 18, 2022Updated 3 years ago
- ☆23May 21, 2026Updated 2 months ago
- ☆23Jun 30, 2026Updated last month
- ☆14Feb 17, 2022Updated 4 years ago
- Single-cell epigenomics analysis tools☆324Aug 4, 2026Updated last week