DEGAS is an R package that can be used to prioritize cells in relation to disease.
☆13Nov 6, 2024Updated last year
Alternatives and similar repositories for DEGAS
Users that are interested in DEGAS are comparing it to the libraries listed below
Sorting:
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆17Jan 16, 2026Updated last month
- ☆27Jun 4, 2023Updated 2 years ago
- ☆10Jul 10, 2024Updated last year
- Python library & CLI to create, view and edit PFB files☆12Feb 19, 2026Updated 2 weeks ago
- The AnnSQL package enables SQL based queries on AnnData objects.☆41Aug 20, 2025Updated 6 months ago
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- Store collections of experimental data based on TileDB☆12Feb 23, 2026Updated last week
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆13Mar 23, 2024Updated last year
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 7 years ago
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components☆10Apr 28, 2025Updated 10 months ago
- Rep-Seq data analysis tutorial☆11Dec 6, 2017Updated 8 years ago
- Generic SDK and CLI for GA4GH API services☆14Feb 2, 2026Updated last month
- Papers We Portland☆13Aug 4, 2024Updated last year
- A crate for working with the Task Execution Service (TES) specification.☆13Jan 8, 2026Updated last month
- Kubernetes logos (쿠버네티스 로고 모음)☆15Dec 27, 2025Updated 2 months ago
- 🔗 Personal link shortener that uses an NGINX-compatible map file as a config☆13Updated this week
- Code repository for TCAT analyses☆13Sep 26, 2025Updated 5 months ago
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 6 years ago
- ☆10Mar 22, 2018Updated 7 years ago
- A context aware tool for proteasomal cleavage predictions☆15May 30, 2025Updated 9 months ago
- Playground and generated docs for Protobuf files☆11Oct 15, 2024Updated last year
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 3 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆12Apr 15, 2020Updated 5 years ago
- ☆13Feb 27, 2026Updated last week
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Aug 11, 2022Updated 3 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- ☆12Oct 31, 2020Updated 5 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Feb 28, 2026Updated last week
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- A tool for creating resource prediction models for scientific workflows☆13Feb 27, 2024Updated 2 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- ☆13Jul 5, 2023Updated 2 years ago
- Emacs dynamic module to parse yaml written in Rust☆12Sep 24, 2025Updated 5 months ago
- Code and analysis for the 1000 tools paper☆11Nov 12, 2021Updated 4 years ago
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆16Dec 8, 2024Updated last year
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- Custom docker image build for bitnami/mongodb supporting arm64 architecture☆15Feb 13, 2026Updated 3 weeks ago