greenelab / hgsc_subtypes
Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four
☆12Updated 6 years ago
Alternatives and similar repositories for hgsc_subtypes:
Users that are interested in hgsc_subtypes are comparing it to the libraries listed below
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆23Updated 2 years ago
- Explore the cancer relevance of your gene list☆51Updated last month
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆36Updated 8 months ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 6 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆35Updated 2 years ago
- ☆29Updated last year
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- sake☆27Updated 2 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- ☆33Updated 5 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated 2 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 7 months ago