☆13Jan 23, 2025Updated last year
Alternatives and similar repositories for sequence_cnn_models
Users that are interested in sequence_cnn_models are comparing it to the libraries listed below
Sorting:
- ☆25Aug 20, 2024Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated last year
- ☆11Sep 7, 2023Updated 2 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated last year
- ☆11Oct 4, 2021Updated 4 years ago
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated last year
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 7 months ago
- IntelliGenes: AI/ML pipeline for predictive analyses using multi-genomic profiles.☆18Sep 4, 2024Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆28Nov 6, 2025Updated 3 months ago
- ☆32Feb 21, 2026Updated last week
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 2 years ago
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated 11 months ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- Analyse RNA feature distributions.☆18Dec 16, 2024Updated last year
- scVI extension for unspliced RNA☆16May 18, 2025Updated 9 months ago
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 9 months ago
- ☆19Mar 8, 2023Updated 2 years ago
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆41Jul 10, 2024Updated last year
- ☆44Feb 11, 2026Updated 2 weeks ago
- ☆18Oct 22, 2024Updated last year
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆19Aug 28, 2025Updated 6 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 7 months ago
- ☆19Dec 15, 2023Updated 2 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16May 16, 2023Updated 2 years ago
- ☆20Jul 16, 2024Updated last year
- Snakemake workflow for comparing E-G links to experimental data☆23Jan 22, 2026Updated last month
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Jan 19, 2026Updated last month
- ☆26Nov 7, 2023Updated 2 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 3 years ago
- Code for WACV 2022 paper "Generalized Clustering and Multi-Manifold Learning with Geometric Structure Preservation"☆20Dec 16, 2022Updated 3 years ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Sep 12, 2025Updated 5 months ago
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆22Jun 18, 2022Updated 3 years ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆20Jan 6, 2026Updated last month
- ☆19Mar 21, 2024Updated last year
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆57Feb 20, 2026Updated last week