Alternatives and similar repositories for sequence_cnn_models:

Users that are interested in sequence_cnn_models are comparing it to the libraries listed below

• liu-bioinfo-lab / EPCOT
  ☆21Updated last year
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆13Updated 5 months ago
• ejarmand / comparative_epigenomic_motor_cortex
  ☆10Updated 3 months ago
• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆20Updated 11 months ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆38Updated 4 months ago
• jzhoulab / puffin_manuscript
  ☆17Updated 5 months ago
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆26Updated 2 years ago
• neurogenomics / EnformerCelltyping
  Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…
  ☆13Updated 4 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆32Updated last year
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 7 months ago
• Roy-lab / scMTNI
  ☆25Updated 3 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆25Updated last week
• yal054 / epiformer
  ☆25Updated 9 months ago
• ML4BM-Lab / ELATUS
  ☆11Updated last month
• mhorlacher / rbpnet
  ☆18Updated last year
• lanagarmire / Single-cell-drug-repositioning
  ☆15Updated 8 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆39Updated 2 months ago
• HelloWorldLTY / UKBioLM
  ☆14Updated 2 weeks ago
• shirondru / enformer_fine_tuning
  For fine-tuning Enformer using paired WGS & gene expression data
  ☆13Updated 2 weeks ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆21Updated this week
• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆23Updated last year
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆12Updated 10 months ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆16Updated 3 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆16Updated 8 months ago
• AllonKleinLab / paper-data
  ☆20Updated this week
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆16Updated 5 months ago
• viannegao / ChromaFold
  ☆25Updated 5 months ago