CellRank 2's reproducibility repository.
☆15Sep 4, 2024Updated last year
Alternatives and similar repositories for cellrank2_reproducibility
Users that are interested in cellrank2_reproducibility are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 5 months ago
- ☆13Jan 24, 2024Updated 2 years ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated last year
- ☆22May 6, 2022Updated 3 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆10Dec 11, 2024Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆33Sep 3, 2025Updated 6 months ago
- Deposited codes for snMultiome in human cortex manuscript☆13Aug 12, 2024Updated last year
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆27Sep 30, 2025Updated 5 months ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆13Aug 10, 2022Updated 3 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆67Nov 23, 2025Updated 4 months ago
- A deep model infers gene regulation networks from scRNA-seq data.☆12Aug 1, 2024Updated last year
- Read and write TIFF images in R☆11Nov 27, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Hierarchical Cell Annotation☆27Nov 17, 2024Updated last year
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆13Dec 27, 2023Updated 2 years ago
- Vignettes for Cardinal3 paper☆10Feb 20, 2023Updated 3 years ago
- ☆17Jun 6, 2022Updated 3 years ago
- Generate signature matrix from single cell data.☆11Apr 13, 2021Updated 4 years ago
- Nextflow implementation of scAutoQC pipeline☆11Feb 21, 2026Updated last month
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated last year
- Phylogenetic analyses code☆10Feb 12, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Splits fastq files evenly☆23Aug 19, 2020Updated 5 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Aug 8, 2023Updated 2 years ago
- TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Tempora…☆16May 20, 2025Updated 10 months ago
- ☆15Feb 28, 2025Updated last year
- ☆16Sep 1, 2023Updated 2 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- ☆20Jun 2, 2025Updated 9 months ago
- ☆16Jan 12, 2026Updated 2 months ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Some examples to analyze mass spectrometry data using MALDIquant☆17Oct 13, 2022Updated 3 years ago
- ☆12Mar 1, 2020Updated 6 years ago
- ☆14Oct 17, 2024Updated last year
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23May 20, 2023Updated 2 years ago
- ☆16Dec 3, 2024Updated last year
- Needleman-Wunsch and Hirschberg algorithms☆13Aug 26, 2020Updated 5 years ago