theislab / cellrank2_reproducibilityLinks
CellRank 2's reproducibility repository.
☆14Updated last year
Alternatives and similar repositories for cellrank2_reproducibility
Users that are interested in cellrank2_reproducibility are comparing it to the libraries listed below
Sorting:
- ☆21Updated 4 months ago
- ☆39Updated 4 months ago
- Computational pipeline to process EasySci-RNA data.☆21Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 8 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 2 months ago
- ☆23Updated 9 months ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆24Updated last month
- ☆24Updated last year
- Codes used in LISTA project.☆14Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- ☆12Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Hierarchical Cell Annotation☆26Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- Trends in single cell papers☆16Updated last year
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆23Updated last year
- R package IReNA☆28Updated last year
- iterative clustering pipeline of big single cell datasets.☆34Updated 2 months ago
- ☆39Updated 2 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 8 months ago
- AD regulome analysis☆14Updated 2 years ago
- ☆14Updated 2 years ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Updated 2 years ago
- Code used to process the data of the HBCA project☆32Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- ☆13Updated last year