CellRank 2's reproducibility repository.
☆16Sep 4, 2024Updated last year
Alternatives and similar repositories for cellrank2_reproducibility
Users that are interested in cellrank2_reproducibility are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Jan 24, 2024Updated 2 years ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 10 months ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- ☆12Jun 11, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆38Jan 9, 2024Updated 2 years ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- ☆23May 21, 2026Updated 2 months ago
- ☆10Dec 11, 2024Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆35Jul 23, 2026Updated 3 weeks ago
- Deposited codes for snMultiome in human cortex manuscript☆14Aug 12, 2024Updated 2 years ago
- Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".☆14Aug 10, 2022Updated 4 years ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15Feb 12, 2026Updated 6 months ago
- Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Zi…☆15Nov 25, 2025Updated 8 months ago
- Vignettes for Cardinal3 paper☆10Feb 20, 2023Updated 3 years ago
- A deep model infers gene regulation networks from scRNA-seq data.☆12Jul 26, 2026Updated 2 weeks ago
- Map large-scale single cells to the exact spatial locations☆21Jun 9, 2026Updated 2 months ago
- 2019 single cell RNA sequencing Workshop @ UCD AND UCSF☆17Nov 25, 2019Updated 6 years ago
- ☆17Apr 15, 2025Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- ☆18Oct 17, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated last month
- Code for "Feature selection methods affect the performance of scRNA-seq data integration and querying"☆33Mar 15, 2025Updated last year
- Read and write TIFF images in R☆10Nov 27, 2023Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆99Nov 30, 2023Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 9 months ago
- CellRank: dynamics from multi-view single-cell data☆455Aug 3, 2026Updated last week
- A shiny app for metacell analysis☆11Jun 1, 2026Updated 2 months ago
- ☆13Mar 1, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆59Nov 1, 2024Updated last year
- ☆17Jun 6, 2022Updated 4 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- scType rewritten in python☆25Nov 7, 2024Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- Phylogenetic analyses code☆10Feb 12, 2020Updated 6 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago