SciLifeLab / NGI-MethylSeqLinks
This pipeline has moved! Please see:
☆11Updated 7 years ago
Alternatives and similar repositories for NGI-MethylSeq
Users that are interested in NGI-MethylSeq are comparing it to the libraries listed below
Sorting:
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Whole Genome Sequenceing Structural Variation Pipelines☆17Updated 6 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- Pipeline for poreathon☆14Updated 10 years ago
- a string to graph aligner☆41Updated 9 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆25Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- reference free variant assembly☆34Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- YAMP: Yet Another Metagenomic Pipeline☆60Updated 2 years ago
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Kraken2 Server☆22Updated last year
- De novo assembly of nanopore reads using nextflow☆20Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated last month
- 10x Genomics Reads Simulator☆45Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Updated 4 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Updated 2 weeks ago