SciLifeLab / NGI-MethylSeqLinks
This pipeline has moved! Please see:
☆11Updated 7 years ago
Alternatives and similar repositories for NGI-MethylSeq
Users that are interested in NGI-MethylSeq are comparing it to the libraries listed below
Sorting:
- ☆9Updated 7 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆14Updated 5 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆16Updated 6 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 6 years ago
- ☆9Updated 8 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Updated 4 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 5 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Explore and analyze biological sequence data☆16Updated 10 months ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- scripts to parse IrysView output☆11Updated 9 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- A community menagarie of automated variant validations using bcbio and the Common Workflow Language☆20Updated 3 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 8 months ago
- Pipeline for poreathon☆14Updated 10 years ago