SciLifeLab / NGI-MethylSeqLinks
This pipeline has moved! Please see:
☆11Updated 7 years ago
Alternatives and similar repositories for NGI-MethylSeq
Users that are interested in NGI-MethylSeq are comparing it to the libraries listed below
Sorting:
- ☆10Updated 7 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆17Updated 6 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated 2 years ago
- ☆24Updated 6 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- De novo assembly of nanopore reads using nextflow☆20Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 8 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Explore and analyze biological sequence data☆17Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 7 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- Animated GIF of flow cell performance from sequencing summary file.☆13Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- ☆18Updated 8 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated 2 years ago