COMBINE-lab / RapClustLinks
Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
☆31Updated last year
Alternatives and similar repositories for RapClust
Users that are interested in RapClust are comparing it to the libraries listed below
Sorting:
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 months ago
- blast, shmlast☆21Updated 5 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- ☆18Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- sort genomic data☆36Updated 2 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- reference free variant assembly☆34Updated 2 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 months ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago