COMBINE-lab / RapClustLinks
Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
☆31Updated last year
Alternatives and similar repositories for RapClust
Users that are interested in RapClust are comparing it to the libraries listed below
Sorting:
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆22Updated 7 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆18Updated 8 years ago
- blast, shmlast☆21Updated 4 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated last month
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 8 months ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- de novo targeted gene assembly☆23Updated 4 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 7 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- reference free variant assembly☆34Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month