elsiklab / multibigwig
A JBrowse plugin for plotting multiple bigwig subtracks
☆12Updated 3 years ago
Alternatives and similar repositories for multibigwig:
Users that are interested in multibigwig are comparing it to the libraries listed below
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- ☆29Updated 2 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 7 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- ☆35Updated 5 years ago
- Scaffolding with RNA-seq read alignment☆20Updated 6 years ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13Updated 8 years ago
- ☆48Updated 8 months ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- JBrowse plugin that supports smallRNA alignments☆12Updated 5 years ago
- a simple C++ library for parsing and manipulating VCF files, + many command-line utilities☆20Updated 7 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆31Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- JBrowse plugin for methylation related things☆15Updated 6 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- de Bruijn Workflow using Integral information of Short pair End reads☆13Updated 6 months ago