bioinfologics / w2rap-contiggerLinks
An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
☆45Updated 2 years ago
Alternatives and similar repositories for w2rap-contigger
Users that are interested in w2rap-contigger are comparing it to the libraries listed below
Sorting:
- finshingTool☆54Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- TGS scaffolding☆46Updated 3 years ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- ☆66Updated 2 weeks ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆70Updated 6 years ago
- Show pangenome graphs in an easy way☆56Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated 5 months ago
- Genome Pair Rapid Dotter☆67Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ✏️ Genome assembly polishing & SNV detection☆70Updated 2 months ago
- k-mer learning materials☆74Updated 7 months ago
- ☆44Updated 8 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆39Updated 11 months ago
- ☆26Updated 5 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 months ago
- SV genotyping with long reads☆39Updated 2 years ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆69Updated 4 years ago