Alternatives and similar repositories for w2rap-contigger:

Users that are interested in w2rap-contigger are comparing it to the libraries listed below

• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• kakitone / finishingTool
  finshingTool
  ☆54Updated 8 years ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆27Updated 3 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆56Updated last year
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated 3 weeks ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆74Updated 8 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆32Updated 2 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated last year
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆73Updated last month
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆54Updated 2 years ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆22Updated 2 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 6 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆85Updated 9 months ago
• kjenike / panagram
  ☆61Updated last week
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• cboursnell / crb-blast
  Conditional Reciprocal Best Blast
  ☆40Updated 7 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆43Updated 5 months ago
• daewoooo / SVbyEye
  ☆74Updated 3 months ago
• niccw / repeatcraftp
  meta-pipeline for repetitive element de-fragmentation and annotation
  ☆24Updated 4 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆29Updated 3 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆70Updated last month
• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆33Updated 6 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆93Updated last week
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆59Updated 2 weeks ago
• PacificBiosciences / jasmine
  Predict 5mC in PacBio HiFi reads
  ☆36Updated this week