bioinfologics / w2rap-contiggerLinks
An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
☆45Updated 3 years ago
Alternatives and similar repositories for w2rap-contigger
Users that are interested in w2rap-contigger are comparing it to the libraries listed below
Sorting:
- TGS scaffolding☆47Updated 4 years ago
- finshingTool☆54Updated 9 years ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆71Updated 2 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 3 weeks ago
- ☆68Updated last month
- ☆33Updated 4 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Graph based multi genome aligner☆49Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 5 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Updated 5 years ago
- Show pangenome graphs in an easy way☆56Updated 4 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago