bioinfologics / w2rap-contiggerLinks
An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
☆45Updated 2 years ago
Alternatives and similar repositories for w2rap-contigger
Users that are interested in w2rap-contigger are comparing it to the libraries listed below
Sorting:
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- finshingTool☆54Updated 8 years ago
- TGS scaffolding☆46Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆38Updated 2 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Call select base modifications in PacBio HiFi reads☆8Updated 4 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- ☆44Updated 8 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A battery of methylation tools for PacBio HiFi reads☆36Updated 3 weeks ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- ☆76Updated 5 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- ☆63Updated last week
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated 3 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆80Updated 7 months ago
- a nextflow pipeline for creating a pangenome with minigraph-cactus☆15Updated 9 months ago
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago