Compare assembly graph file formats
☆16Jul 23, 2015Updated 11 years ago
Alternatives and similar repositories for assembly-graph
Users that are interested in assembly-graph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 9 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- RAPTR-SV uses Read Pair and Split Read methods to identify structural variants in paired-end WGS data☆10Aug 18, 2016Updated 10 years ago
- compressed, queryable variation graphs☆11Jun 25, 2015Updated 11 years ago
- Graphical Fragment Assembly (GFA) Format Specification☆222Aug 21, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools for next-generation sequencing analysis☆90Jun 25, 2019Updated 7 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 6 months ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 12 years ago
- Find all significant local alignments between reads☆141Jul 3, 2024Updated 2 years ago
- Low memory multithreaded hash table☆25Mar 23, 2015Updated 11 years ago
- Web based viewer for small to medium GFA format files, similar to Bandage☆13Jun 19, 2026Updated 4 months ago
- A Swiss army knife for genome projects☆15Aug 13, 2013Updated 13 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.☆58Aug 21, 2014Updated 12 years ago
- de novo sequence assembler using string graphs☆244Aug 8, 2019Updated 7 years ago
- [Bio in Docker] Symposium 2015☆21Sep 26, 2017Updated 9 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 4, 2026Updated last month
- An integrated high performance bioinformatics toolkit☆23Apr 24, 2019Updated 7 years ago
- A python library for decomposing and visualizing tandem repeat sequences☆11May 26, 2026Updated 5 months ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 4 years ago
- MIX: Combining multiple assemblies from NGS data☆13Apr 14, 2016Updated 10 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- libstrbuf: A powerful string library for C☆18Oct 15, 2016Updated 10 years ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 10 years ago
- A Lossy compressor for Quality Scores in Genomic Data☆12Oct 4, 2016Updated 10 years ago
- Various bioinformatics tools☆20Oct 29, 2024Updated 2 years ago
- Library for Reading Bioinformatic Sequence Data in C☆14Nov 7, 2016Updated 9 years ago
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- A Bayesian method for doing transcriptome assembly from RNA-seq data☆25Feb 2, 2015Updated 11 years ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆46Jun 21, 2020Updated 6 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆46Jun 16, 2026Updated 4 months ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Validate FastQ Files☆36Oct 30, 2018Updated 8 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- Trim adapters from MGI sequence data☆14Jun 11, 2023Updated 3 years ago
- ☆24Aug 9, 2017Updated 9 years ago