Compare assembly graph file formats
☆16Jul 23, 2015Updated 10 years ago
Alternatives and similar repositories for assembly-graph
Users that are interested in assembly-graph are comparing it to the libraries listed below
Sorting:
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆13Aug 6, 2022Updated 3 years ago
- efficient alignment of strings to partially ordered string graphs☆33Jan 31, 2022Updated 4 years ago
- [Bio in Docker] Symposium 2015☆21Sep 26, 2017Updated 8 years ago
- An integrated high performance bioinformatics toolkit☆23Apr 24, 2019Updated 6 years ago
- Graphical Fragment Assembly (GFA) Format Specification☆218Aug 21, 2024Updated last year
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- A Lossy compressor for Quality Scores in Genomic Data☆12Oct 4, 2016Updated 9 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 11 months ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Aug 19, 2016Updated 9 years ago
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 5 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 9 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- ☆13Jun 21, 2017Updated 8 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- compressed, queryable variation graphs☆11Jun 25, 2015Updated 10 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆264Nov 30, 2023Updated 2 years ago
- Documentation for NCBI BLAST AMI☆11Feb 28, 2022Updated 4 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Jul 24, 2019Updated 6 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- BGZF Stream☆13Jul 27, 2023Updated 2 years ago
- ☆27Jan 13, 2026Updated 2 months ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated last year
- Population-scale detection of novel sequence insertions☆27Aug 16, 2022Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 weeks ago