sreeramkannan / ShannonLinks
RNA-Seq
☆24Updated 7 years ago
Alternatives and similar repositories for Shannon
Users that are interested in Shannon are comparing it to the libraries listed below
Sorting:
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Parallel implementation of the LAST aligner☆18Updated 9 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- RUFUS k-mer based genomic variant detection☆54Updated this week
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆27Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 2 months ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- variation discovery using long range information in linked-reads☆15Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Updated 8 years ago
- Analysis toolkit and programming library for k-mer profiles☆31Updated 4 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago