Alternatives and similar repositories for Shannon

Users that are interested in Shannon are comparing it to the libraries listed below

• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 6 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated 2 years ago
• kevlar-dev / kevlar
  Reference-free variant discovery in large eukaryotic genomes
  ☆41Updated 4 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆22Updated 3 years ago
• wtsi-svi / ReadServer
  Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)
  ☆14Updated 8 years ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 9 years ago
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆24Updated 4 years ago
• mklarqvist / tomahawk
  Fast calculations of linkage-disequilibrium in large-scale human cohorts
  ☆44Updated 6 years ago
• cdarby / samovar
  Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
  ☆23Updated 6 years ago
• LUMC / kPAL
  Analysis toolkit and programming library for k-mer profiles
  ☆31Updated 4 years ago
• jandrewrfarrell / RUFUS
  RUFUS k-mer based genomic variant detection
  ☆54Updated last week
• hallamlab / LAST-Plus
  Parallel implementation of the LAST aligner
  ☆18Updated 9 years ago
• atifrahman / HAWK
  Hitting associations with k-mers
  ☆44Updated 3 years ago
• dillonl / graphite
  Graphite - Graph-based variant adjudication
  ☆28Updated 4 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆46Updated 6 years ago
• Malfoy / BGREAT
  de Bruijn Graph REAd mapping Tool
  ☆14Updated 8 years ago
• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆63Updated 4 years ago
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 10 years ago
• BoevaLab / SV-Bay
  Detection of structural variants in cancer mate-pair and paired-end data
  ☆13Updated 6 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 6 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• cschin / Write_A_Genome_Assembler_With_IPython
  The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
  ☆30Updated 7 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• adigenova / fast-sg
  Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
  ☆22Updated 7 years ago
• GregoryFaust / yaha
  yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…
  ☆20Updated 8 years ago
• ekg / glia
  a string to graph aligner
  ☆41Updated 9 years ago
• DEploid-dev / DEploid
  dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…
  ☆21Updated 11 months ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆58Updated 4 months ago
• mcveanlab / treeseq-inference
  Work for the tree sequence inference paper.
  ☆23Updated 5 years ago