Gaius-Augustus / GUSHR
Generating UTRs from SHort Reads
☆11Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for GUSHR
- A nextflow pipeline for polishing CLR assemblies☆16Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆11Updated last year
- ☆19Updated 3 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- ☆24Updated last year
- Improved Phased Assembler☆28Updated 2 years ago
- ☆20Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Convert HAL to VG☆21Updated 3 months ago
- Find Unique genomic Regions☆29Updated this week
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆24Updated 5 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 3 months ago
- This is code for running Orthofinder -> PAML☆12Updated 8 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆27Updated this week
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- The MafFilter genome alignment processor☆17Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated 2 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆24Updated 8 months ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 2 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆34Updated 2 years ago