Gaius-Augustus / GUSHR
Generating UTRs from SHort Reads
☆9Updated 3 years ago
Related projects: ⓘ
- A nextflow pipeline for polishing CLR assemblies☆16Updated last year
- Better Alignments with Translated HMMER☆15Updated this week
- Simultaneous multi-sample transcript assembler for RNA-seq data☆16Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- ☆17Updated 3 weeks ago
- A comparative genome scaffolding tool☆17Updated 5 years ago
- The MafFilter genome alignment processor☆17Updated this week
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆11Updated 2 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆10Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆10Updated this week
- ☆19Updated 9 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆10Updated last year
- profile the repeat landscape in a genome☆15Updated 10 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated last month
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Scaffolding with Ultralong Reads☆14Updated 3 years ago
- Add multiple thread function for genome comparison☆15Updated 2 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆19Updated 9 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆23Updated 3 months ago
- Segmental duplication detection tool☆12Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆19Updated last month
- Extracts subgraphs or components from a graph in GFA format☆21Updated 3 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆12Updated 4 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated 9 months ago
- ☆24Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆23Updated 5 months ago