Generating UTRs from SHort Reads
☆11Sep 28, 2020Updated 5 years ago
Alternatives and similar repositories for GUSHR
Users that are interested in GUSHR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30Aug 1, 2023Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Apr 7, 2026Updated last week
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Find, circularise and annotate mitogenome from PacBio assemblies☆194May 11, 2025Updated 11 months ago
- ☆20Dec 13, 2023Updated 2 years ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 5 months ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- Tiberius is a deep learning gene finder.☆105Apr 9, 2026Updated last week
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated last month
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆21Updated this week
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Nov 25, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆100Apr 7, 2026Updated last week
- GeneValidator: Identify problems with predicted genes☆49Mar 1, 2024Updated 2 years ago
- ☆21Jan 13, 2026Updated 3 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 4 months ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 2 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Updated this week
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 3 weeks ago
- Detecting multi-genome synteny using minimizer graph mapping☆106Apr 2, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated last year
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- Fully automated generation of UCSC assembly hubs☆35Oct 2, 2024Updated last year
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆26Mar 27, 2026Updated 3 weeks ago
- This is code for running Orthofinder -> PAML☆12Jul 27, 2016Updated 9 years ago
- ☆28Mar 30, 2026Updated 2 weeks ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆16Oct 11, 2021Updated 4 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- ☆33Jul 9, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- The MafFilter genome alignment processor☆19Apr 10, 2026Updated last week
- A Python package with integrated lncRNA prediction methods☆13Feb 17, 2021Updated 5 years ago
- Pytorch implementation of DeePromoter Active sequence detection for promoter(DNA subsequence regulates transcription initiation of the ge…☆13Jul 8, 2021Updated 4 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 4 months ago
- Segmental duplication detection tool☆16Feb 7, 2023Updated 3 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 5 years ago