Alternatives and similar repositories for spectrassembler:

Users that are interested in spectrassembler are comparing it to the libraries listed below

• xa6xa6 / metaOthello
  ☆16Updated 6 years ago
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆18Updated 3 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 months ago
• emilhaegglund / schavott
  Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing
  ☆9Updated 6 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆20Updated 4 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆18Updated 4 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 8 years ago
• mchaisso / mcutils
  ☆12Updated 3 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 5 years ago
• Malfoy / BCOOL
  de Bruijn graph cOrrectiOn from graph aLignment
  ☆11Updated 4 years ago
• uio-bmi / NucMerge
  Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads
  ☆7Updated 6 years ago
• isovic / minialign
  Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
  ☆10Updated 7 years ago
• Flavia95 / VGpop
  Population genetics analysis on VG
  ☆16Updated 3 years ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 5 years ago
• thegenemyers / DAMAPPER
  Long read to reference genome mapping tool
  ☆13Updated 10 months ago
• usnistgov / pepr
  Pipeline for Evaluating Prokaryotic References
  ☆11Updated 8 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆32Updated last year
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 7 years ago
• DReichLab / adna
  Processing WGS aDNA data using the ReichLab protocol
  ☆12Updated 5 years ago
• cvdelannoy / poreTally
  Benchmark MinION assembler pipelines and publish your results in a heartbeat!
  ☆15Updated 4 years ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 5 years ago
• Malfoy / BGREAT2
  Paired reads mapping on de Bruijn graph
  ☆13Updated 6 years ago
• medvedevgroup / BubbZ
  ☆15Updated 4 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆16Updated last year
• yanboANU / Kmer2SNP
  ☆26Updated 3 years ago
• bacpop / unitig-caller
  Methods to determine sequence element (unitig) presence/absence
  ☆18Updated last month
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆19Updated 4 years ago