Alternatives and similar repositories for BCALM:

Users that are interested in BCALM are comparing it to the libraries listed below

• pmelsted / dbg
  Naive de Bruijn graph implementation in python
  ☆36Updated 7 years ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆40Updated 2 years ago
• rchikhi / python-bcalm
  Python implementation of the BCALM algorithm
  ☆15Updated 8 years ago
• jgurtowski / ectools
  tools for error correction and working with long read data
  ☆44Updated 10 years ago
• jts / dbgfm
  FM-index representation of a de Bruijn graph
  ☆27Updated 7 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• ythuang0522 / StriDe
  StriDe Assembler
  ☆25Updated 7 years ago
• cschin / Write_A_Genome_Assembler_With_IPython
  The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
  ☆31Updated 6 years ago
• DecodeGenetics / BamHash
  ☆37Updated 4 years ago
• younglululu / COCACOLA
  COCACOLA: a general framework for binning contigs in metagenomic studies incorporating read COverage, CorrelAtion, sequence COmposition a…
  ☆17Updated 7 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• abdullah009 / kcmbt_mt
  k-mer Counter based on Multiple Burst Trees (multi-threaded)
  ☆13Updated 8 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆53Updated 4 years ago
• Malfoy / BGREAT
  de Bruijn Graph REAd mapping Tool
  ☆14Updated 7 years ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 6 months ago
• broadinstitute / pyfrost
  Python bindings for Bifrost with a NetworkX compatible API
  ☆28Updated last year
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• mariokostelac / ra-integrate
  DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)
  ☆18Updated 9 years ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated 10 months ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 2 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 7 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 3 years ago
• sequencing / EAGLE
  Enhanced Artificial Genome Engine: next generation sequencing reads simulator
  ☆32Updated 4 years ago
• VGP / vgp-tools
  ☆28Updated last year
• TavorB / spectral_jaccard_similarity
  ☆14Updated 2 years ago
• pmelsted / BFCounter
  ☆24Updated 7 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆32Updated last year
• dancooke / bioio
  Lightweight C++ library for reading FASTA and FASTQ files.
  ☆11Updated 5 years ago
• hallamlab / LCAStar
  Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
  ☆14Updated 8 months ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago