rchikhi / python-bcalm
Python implementation of the BCALM algorithm
☆15Updated 8 years ago
Alternatives and similar repositories for python-bcalm:
Users that are interested in python-bcalm are comparing it to the libraries listed below
- De novo assembly of nanopore reads using nextflow☆20Updated 4 years ago
- VIGOR4☆19Updated this week
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- Targeted genotyper for complex polymorphic genes☆20Updated this week
- A long-read analysis toolbox for cancer and population genomics☆22Updated 2 months ago
- ☆34Updated 5 years ago
- ☆14Updated last year
- ☆28Updated 2 weeks ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- ☆16Updated 3 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated 7 months ago
- Workflow Description Language (WDL) scripts for common vg workflows☆20Updated 2 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Web based viewer for small to medium GFA format files, similar to Bandage☆11Updated 2 months ago
- Example of SGTK application for E.coli dataset:☆32Updated 4 years ago
- read cloud assembler☆35Updated 6 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 6 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Alignment-based Scrubbing pipeline☆20Updated last year
- tools for error correction and working with long read data☆44Updated 10 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- ☆20Updated 3 years ago