rchikhi / python-bcalmLinks
Python implementation of the BCALM algorithm
☆15Updated 8 years ago
Alternatives and similar repositories for python-bcalm
Users that are interested in python-bcalm are comparing it to the libraries listed below
Sorting:
- De novo assembly of nanopore reads using nextflow☆20Updated 4 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 6 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆16Updated 6 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- VIGOR4☆20Updated 2 months ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Pipeline for generate Ks plots of transcriptome data.☆12Updated 7 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆21Updated 7 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated 10 months ago
- ☆26Updated 4 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Genotype Imputation Pipeline for H3Africa☆21Updated 8 months ago
- UCSC Nanopore☆43Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Analysis toolkit and programming library for k-mer profiles☆31Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- ☆34Updated 5 years ago