StriDe Assembler
☆25Nov 23, 2017Updated 8 years ago
Alternatives and similar repositories for StriDe
Users that are interested in StriDe are comparing it to the libraries listed below
Sorting:
- ☆13Jan 20, 2016Updated 10 years ago
- A Bayesian method for doing transcriptome assembly from RNA-seq data☆25Feb 2, 2015Updated 11 years ago
- FM-index representation of a de Bruijn graph☆26Aug 7, 2017Updated 8 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 3 months ago
- A tool for merging large BWTs☆24Nov 26, 2020Updated 5 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- De novo genome assembly and multisample variant calling☆112Mar 28, 2019Updated 6 years ago
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- Graph based multi genome aligner☆49Sep 17, 2021Updated 4 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Nov 6, 2024Updated last year
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Apr 10, 2019Updated 6 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Nov 25, 2022Updated 3 years ago
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Oct 17, 2018Updated 7 years ago
- BWT-based index for graphs☆73Mar 12, 2025Updated 11 months ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 12 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 9 years ago
- Fast and memory-efficient sequencing error corrector☆94Jan 4, 2026Updated 2 months ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 6 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- Low memory multithreaded hash table☆24Mar 23, 2015Updated 10 years ago
- Smith-Waterman database searches with inter-sequence SIMD parallelisation☆61Nov 7, 2023Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago