Generic pipeline system
☆23Jul 20, 2018Updated 8 years ago
Alternatives and similar repositories for vr-pipe
Users that are interested in vr-pipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute☆32Mar 19, 2021Updated 5 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated last year
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- Generate and process BAM files from Illumina sequencing instrument files☆23Feb 25, 2016Updated 10 years ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 8 years ago
- Awesome resources related to Galaxy project☆11Jul 6, 2026Updated last month
- de novo virus assembler of Illumina paired reads☆58May 17, 2021Updated 5 years ago
- fast bloomfilter☆21May 13, 2014Updated 12 years ago
- An Oxford Nanopore Basecaller☆70Sep 4, 2021Updated 4 years ago
- de novo sequence assembler using string graphs☆244Aug 8, 2019Updated 7 years ago
- company backend for plsense☆14Jan 18, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- AngularJS filters wrapping the 'humanize' library☆10Jul 30, 2015Updated 11 years ago
- ☆18Sep 24, 2024Updated last year
- A WGS de novo assembler based on the FMD-index for large genomes☆74Dec 6, 2013Updated 12 years ago
- Reference-based compression of SRA data☆40Mar 26, 2013Updated 13 years ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 11 years ago
- Rescale genetic polymorphism data to match a common sample size.☆16Nov 4, 2021Updated 4 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 10 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 10 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- apache2 modules for bioinformatics.☆18Sep 15, 2014Updated 11 years ago
- JavaScript Sequence Alignment Viewer☆11Mar 25, 2022Updated 4 years ago
- genvenn is a D3js project to visualise list/set data comparisons with standard symmetric venn diagrams. The project is aimed at providing…☆12Jun 28, 2017Updated 9 years ago
- A Bayesian method for doing transcriptome assembly from RNA-seq data☆25Feb 2, 2015Updated 11 years ago
- Ray -- Parallel genome assemblies for parallel DNA sequencing☆68Jul 26, 2017Updated 9 years ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- Fast Tandem Repeat Finder☆16Aug 9, 2026Updated 3 weeks ago
- MuTect -- Accurate and sensitive cancer mutation detection☆104Feb 13, 2023Updated 3 years ago
- Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows☆14Jun 27, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Processing and analysis of data coming from Illumina sequencing machines☆11Aug 20, 2026Updated last week
- Nextera Long Mate Pair analysis and processing tool☆18Mar 26, 2020Updated 6 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆82May 31, 2022Updated 4 years ago
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 11 years ago
- Common Lisp implementation of RFC 4122 -- not unlike UUID☆19Oct 6, 2021Updated 4 years ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆38May 21, 2024Updated 2 years ago