VertebrateResequencing / vr-pipeLinks
Generic pipeline system
☆23Updated 6 years ago
Alternatives and similar repositories for vr-pipe
Users that are interested in vr-pipe are comparing it to the libraries listed below
Sorting:
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute☆31Updated 4 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- ☆36Updated 2 months ago
- ☆29Updated 3 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆30Updated last week
- Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib☆24Updated 5 months ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 7 years ago
- Illumina analysis pipeline☆14Updated 5 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated last year
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- ☆30Updated 8 years ago
- Aligner for sequencing data☆18Updated 7 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- Tools for querying and analysis of genomic data☆27Updated 7 months ago
- Fast & accurate alignment of barcoded short-reads☆33Updated last year
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- A Teaching Engine for Genomics☆12Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18Updated last week