☆14Sep 11, 2023Updated 3 years ago
Alternatives and similar repositories for mbtools
Users that are interested in mbtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Oct 13, 2021Updated 5 years ago
- Aggregate modified-base calls from BAM files into bedMethyl for downstream methylation analysis☆53Sep 27, 2025Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31May 25, 2026Updated 5 months ago
- ☆63Sep 15, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 5 years ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- base-level dotplots from PAF alignments☆36Updated this week
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 4 years ago
- GPU CRF-CTC decoding for nanopore basecalling☆16Oct 17, 2026Updated last week
- ☆11Mar 4, 2025Updated last year
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 4 years ago
- SV genotyping with long reads☆41Jul 3, 2023Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆109Jan 17, 2026Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 6 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- A tool for motif annotation and visualization in tandem repeats.☆15Oct 23, 2026Updated last week
- Awesome list of HiC data analysing tools☆11May 3, 2023Updated 3 years ago
- Ultima scripts related to downstream processing of WGS, MRD, methylation analysis☆11Sep 24, 2026Updated last month
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- VNTR annotation using motif selection☆44Updated this week
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- ☆33Nov 6, 2022Updated 3 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- Structural variant (SV) analysis tools☆42Jul 1, 2024Updated 2 years ago
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆37Aug 18, 2025Updated last year
- Population-wide Deletion Calling☆35Apr 16, 2025Updated last year
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Oct 14, 2026Updated 2 weeks ago
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago