☆14Sep 11, 2023Updated 2 years ago
Alternatives and similar repositories for mbtools
Users that are interested in mbtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- base-level dotplots from PAF alignments☆36Sep 18, 2025Updated 11 months ago
- Aggregate modified-base calls from BAM files into bedMethyl for downstream methylation analysis☆53Sep 27, 2025Updated 11 months ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Jan 17, 2026Updated 7 months ago
- GPU CRF-CTC decoding for nanopore basecalling☆16Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated last month
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- ☆33Nov 6, 2022Updated 3 years ago
- ☆63Sep 15, 2025Updated 11 months ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- PCA in rust☆16Jul 30, 2023Updated 3 years ago
- Population-wide Deletion Calling☆35Apr 16, 2025Updated last year
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Feb 2, 2022Updated 4 years ago
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 3 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated last year
- ☆22Aug 3, 2026Updated 3 weeks ago
- ☆16Jan 10, 2022Updated 4 years ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 3 years ago
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- GRAph-based Finding of Individual Motif Occurrences☆33Aug 29, 2024Updated 2 years ago
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆18Jan 16, 2025Updated last year
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 6 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 25, 2026Updated 3 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- PEPPER-Margin-DeepVariant☆260Jan 12, 2024Updated 2 years ago
- ☆21Feb 16, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 10 months ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery☆11Oct 5, 2022Updated 3 years ago
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 8 months ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago