lucian-ilie / SAGE2
De novo genome assembler.
☆11Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for SAGE2
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 4 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 4 years ago
- Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads☆7Updated 5 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 weeks ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 4 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- ☆9Updated 4 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 2 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆12Updated 3 years ago
- ☆14Updated 4 years ago
- mreps: software for tandem repeat identification in DNA☆13Updated 4 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated 10 months ago
- Detects human contamination in bam files☆16Updated 4 years ago
- split a FASTA sequence file into shorter sequences☆10Updated 3 years ago
- ☆22Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 7 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆11Updated this week
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- ☆16Updated 6 years ago
- Next Index to Query Kmer Intersection☆16Updated last year
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18Updated 7 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Long read to reference genome mapping tool☆13Updated 7 months ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Updated 6 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆10Updated 5 years ago