Malfoy / BGREAT
de Bruijn Graph REAd mapping Tool
☆14Updated 7 years ago
Alternatives and similar repositories for BGREAT:
Users that are interested in BGREAT are comparing it to the libraries listed below
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13Updated 8 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- Paired reads mapping on de Bruijn graph☆13Updated 6 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆13Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 6 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆24Updated 11 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Alignment-based Scrubbing pipeline☆20Updated last year
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Software for Nanopore Analysis☆10Updated 7 years ago
- Rapid competitive read demulitplexer. Made with tries.☆24Updated last year
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 5 months ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- Module to determine where repeats are and make soft-masks of said☆10Updated last year
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- ☆28Updated last year