Malfoy / BGREATLinks
de Bruijn Graph REAd mapping Tool
☆14Updated 8 years ago
Alternatives and similar repositories for BGREAT
Users that are interested in BGREAT are comparing it to the libraries listed below
Sorting:
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- de Bruijn Graph-based read aligner☆35Updated 7 years ago
- my PhD thesis☆36Updated 6 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- a string to graph aligner☆41Updated 9 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Updated 8 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 7 years ago
- reference free variant assembly☆34Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Updated 4 years ago
- ☆13Updated 10 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 6 years ago
- Compare assembly graph file formats☆16Updated 10 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- Graphite - Graph-based variant adjudication☆28Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 5 months ago
- A succinct colored dBG representation☆12Updated 7 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆21Updated last year
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 8 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 7 months ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago