Illumina / happyRLinks
R tools to interact with hap.py output
☆15Updated 6 years ago
Alternatives and similar repositories for happyR
Users that are interested in happyR are comparing it to the libraries listed below
Sorting:
- conda recipes for genomic data☆85Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- ☆13Updated 8 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 7 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus☆10Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Analysis from kallisto paper☆32Updated 9 years ago
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- ☆37Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Numerical Encoding for Human Genetic Variants☆41Updated 2 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- TOPMed analysis pipeline☆52Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- Finding cryptic relationships to boost disease gene detection☆12Updated 2 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago