Alternatives and similar repositories for piledriver

Users that are interested in piledriver are comparing it to the libraries listed below

• amplab / smash
  Benchmarking toolkit for variant calling
  ☆48Updated 5 years ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 6 years ago
• brentp / indelope
  find large indels (in the blind spot between GATK/freebayes and SV callers)
  ☆39Updated 8 years ago
• wtsi-npg / bambi
  Process Illumina instrument data into SAM/BAM/CRAM files.
  ☆10Updated 3 weeks ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 8 years ago
• wtsi-npg / illumina2bam
  Generate and process BAM files from Illumina sequencing instrument files
  ☆23Updated 9 years ago
• wurmlab / genevalidatorapp
  A web wrapper for GeneValidator
  ☆11Updated 4 years ago
• metalhelix / pipette
  variant discovery and annotation using GATK and Ensembl
  ☆17Updated 12 years ago
• johandahlberg / piper
  A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…
  ☆21Updated 9 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆86Updated 7 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆32Updated 10 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆67Updated 3 years ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 9 years ago
• clintval / cvbio
  Artisanal 🤣 bioinformatics tools and pipelines in Scala
  ☆20Updated 6 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• BoutrosLaboratory / bamql
  Query language for filtering SAM/BAM reads
  ☆31Updated last year
• chapmanb / bcbio.variation
  Toolkit to analyze genomic variation data, built on the GATK with Clojure
  ☆66Updated 10 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆59Updated 8 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• cbcrg / piper-nf
  RNA mapping pipeline
  ☆18Updated 7 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆30Updated last year
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆30Updated 6 years ago
• ewels / nf-core-rnaseq
  See the main fork of this repository here >>>
  ☆39Updated 2 weeks ago
• incertae-sedis / smof
  Explore and analyze biological sequence data
  ☆17Updated last year
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 7 years ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 5 years ago
• openvax / varlens
  commandline manipulation of genomic variants and NGS reads
  ☆19Updated last year
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 9 years ago
• ericminikel / minimal_representation
  Convert genetic variants to minimal representation
  ☆23Updated 8 years ago