wanpinglee / MOSAIKLinks
reference-guided aligner for next-generation sequencing technologies
☆55Updated 8 years ago
Alternatives and similar repositories for MOSAIK
Users that are interested in MOSAIK are comparing it to the libraries listed below
Sorting:
- 10x Genomics Reads Simulator☆45Updated last year
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Updated 7 months ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last week
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Tools for bam file processing☆55Updated 10 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Updated 11 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- tools for error correction and working with long read data☆44Updated 10 years ago
- CRAM format specification and java API for read data.☆60Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 7 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- small RNA analysis from NGS data☆37Updated 9 months ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- scripts to parse IrysView output☆39Updated 9 years ago
- Linked-Read Alignment Tool☆27Updated 6 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆65Updated 4 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆105Updated 3 months ago