Alternatives and similar repositories for MOSAIK

Users that are interested in MOSAIK are comparing it to the libraries listed below

• aquaskyline / LRSIM
  10x Genomics Reads Simulator
  ☆45Updated last year
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• lh3 / fermi
  A WGS de novo assembler based on the FMD-index for large genomes
  ☆74Updated 11 years ago
• lh3 / hapdip
  The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data
  ☆30Updated 7 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 7 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆56Updated 7 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 7 years ago
• jstjohn / SimSeq
  An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…
  ☆66Updated 10 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 5 years ago
• DecodeGenetics / BamHash
  ☆37Updated 4 years ago
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆51Updated 4 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆71Updated 9 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆66Updated 2 years ago
• mozack / abra
  Assembly Based ReAligner
  ☆73Updated 7 years ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 7 years ago
• broadinstitute / gatk-protected
  Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead
  ☆32Updated 7 years ago
• lpantano / seqcluster
  small RNA analysis from NGS data
  ☆37Updated 8 months ago
• mgymrek / pybamview
  Browser based application for viewing bam alignments
  ☆56Updated 8 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated 11 months ago
• lh3 / samtools
  This is *NOT* the official repository of samtools.
  ☆47Updated 7 years ago
• jgurtowski / ectools
  tools for error correction and working with long read data
  ☆44Updated 10 years ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated last year
• ncbi / sratoolkit
  SRAToolkit has been REPLACED - see README
  ☆38Updated 8 years ago
• sequencing / EAGLE
  Enhanced Artificial Genome Engine: next generation sequencing reads simulator
  ☆32Updated 5 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• pmelsted / pizzly
  Fast fusion detection using kallisto
  ☆80Updated 7 months ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 3 months ago
• sequencing / isaac_variant_caller
  This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka
  ☆37Updated 8 years ago