bioinform / breakseq2Links
BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
☆24Updated 9 years ago
Alternatives and similar repositories for breakseq2
Users that are interested in breakseq2 are comparing it to the libraries listed below
Sorting:
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago