bioinform / breakseq2Links
BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
☆25Updated 9 years ago
Alternatives and similar repositories for breakseq2
Users that are interested in breakseq2 are comparing it to the libraries listed below
Sorting:
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Python package and routines for merging VCF files☆29Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 8 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- sort genomic data☆36Updated 2 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- ☆23Updated 3 weeks ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 9 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 8 years ago