arq5x / lumpy-svLinks
lumpy: a general probabilistic framework for structural variant discovery
☆333Updated 3 years ago
Alternatives and similar repositories for lumpy-sv
Users that are interested in lumpy-sv are comparing it to the libraries listed below
Sorting:
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆271Updated 3 months ago
- A flexible framework for rapid genome analysis and interpretation☆317Updated 2 years ago
- Toolset for SV simulation, comparison and filtering☆395Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆226Updated 3 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆211Updated 5 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆257Updated last year
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆323Updated 3 months ago
- Count bases in BAM/CRAM files☆318Updated 3 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆275Updated 6 months ago
- Structural variation and indel detection by local assembly☆247Updated this week
- Annotation and Ranking of Structural Variation☆262Updated last week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆484Updated 2 weeks ago
- Structural variant toolkit for VCFs☆374Updated 3 weeks ago
- VarDict☆198Updated last year
- Bayesian haplotype-based mutation calling☆318Updated last month
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- BEDOPS: high-performance genomic feature operations☆351Updated 4 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆273Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆204Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Updated last year
- A structural variation pipeline for short-read sequencing☆193Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- A tool for estimating repeat sizes☆197Updated last year
- Read trimming tool for Illumina NGS data.☆142Updated 10 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆269Updated last week
- A tool set for short variant discovery in genetic sequence data.☆200Updated 4 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆383Updated last month
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- C++ API & command-line toolkit for working with BAM data☆429Updated 3 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆219Updated last month