lumpy: a general probabilistic framework for structural variant discovery
☆342Feb 22, 2026Updated 3 months ago
Alternatives and similar repositories for lumpy-sv
Users that are interested in lumpy-sv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆515May 15, 2026Updated last week
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated last month
- Structural variant and indel caller for mapped sequencing data☆465Oct 11, 2025Updated 7 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Structural variation and indel detection by local assembly☆255May 14, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆178Jan 7, 2020Updated 6 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆235Feb 17, 2022Updated 4 years ago
- Toolset for SV simulation, comparison and filtering☆417Dec 1, 2023Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Structural variation caller using third generation sequencing☆654Updated this week
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆241Aug 11, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆283May 21, 2025Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆178Aug 22, 2024Updated last year
- Annotation and Ranking of Structural Variation☆296May 12, 2026Updated last week
- Long read based human genomic structural variation detection with cuteSV☆286Mar 26, 2026Updated last month
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆865Apr 20, 2026Updated last month
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago
- Jasmine: SV Merging Across Samples☆252Dec 20, 2024Updated last year
- Structural variant toolkit for VCFs☆410Mar 21, 2026Updated 2 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆404May 1, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools for working with SAM/BAM data☆610Dec 22, 2024Updated last year
- SV detection from paired end reads mapping☆118Jul 31, 2019Updated 6 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆678Mar 20, 2026Updated 2 months ago
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated last month
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 8 years ago
- A tool set for short variant discovery in genetic sequence data.☆205May 4, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆851May 2, 2026Updated 2 weeks ago
- ☆51Aug 27, 2019Updated 6 years ago
- The next version of bwa-mem☆831Oct 15, 2025Updated 7 months ago
- Copy number variant detection from targeted DNA sequencing☆610Updated this week
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆213Mar 16, 2026Updated 2 months ago
- TIDDIT - structural variant calling☆79Mar 22, 2026Updated 2 months ago
- Sequence-to-graph mapper and graph generator☆478Aug 11, 2025Updated 9 months ago