lumpy: a general probabilistic framework for structural variant discovery
☆344Feb 22, 2026Updated 5 months ago
Alternatives and similar repositories for lumpy-sv
Users that are interested in lumpy-sv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆527Updated this week
- Structural variant and indel caller for mapped sequencing data☆468Oct 11, 2025Updated 9 months ago
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated 3 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- Structural variation and indel detection by local assembly☆256Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆235Feb 17, 2022Updated 4 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆178Jan 7, 2020Updated 6 years ago
- A flexible framework for rapid genome analysis and interpretation☆320Oct 18, 2022Updated 3 years ago
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆571Jul 13, 2024Updated 2 years ago
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Structural variation caller using third generation sequencing☆672Updated this week
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆242Aug 11, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆286May 21, 2025Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆177Aug 22, 2024Updated last year
- Annotation and Ranking of Structural Variation☆304Jun 19, 2026Updated last month
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Long read based human genomic structural variation detection with cuteSV☆290Jul 12, 2026Updated last week
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆876Apr 20, 2026Updated 3 months ago
- Jasmine: SV Merging Across Samples☆256Dec 20, 2024Updated last year
- Structural variant toolkit for VCFs☆420May 22, 2026Updated last month
- annotate a VCF with other VCFs/BEDs/tabixed files☆406Jun 16, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆682Mar 20, 2026Updated 4 months ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 3 months ago
- SV detection from paired end reads mapping☆118Jul 31, 2019Updated 6 years ago
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago
- Population-scale genotyping using pangenome graphs☆201Jan 9, 2025Updated last year
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆206May 4, 2021Updated 5 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆865May 2, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 9 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- Copy number variant detection from targeted DNA sequencing☆615Jul 8, 2026Updated last week
- The next version of bwa-mem☆851Oct 15, 2025Updated 9 months ago
- TIDDIT - structural variant calling☆80Updated this week
- Sequence-to-graph mapper and graph generator☆483Aug 11, 2025Updated 11 months ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆216Jun 23, 2026Updated 3 weeks ago