arq5x / lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
☆309Updated 2 years ago
Related projects: ⓘ
- Toolset for SV simulation, comparison and filtering☆350Updated 9 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆230Updated 3 months ago
- Plot structural variant signals from many BAMs and CRAMs☆512Updated 2 months ago
- Structural variant toolkit for VCFs☆308Updated last week
- Count bases in BAM/CRAM files☆298Updated 2 years ago
- Structural variation and indel detection by local assembly☆230Updated 3 months ago
- BEDOPS: high-performance genomic feature operations☆295Updated 7 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆250Updated 8 months ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆205Updated 4 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆357Updated 9 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆288Updated 3 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆208Updated 2 years ago
- A tool set for short variant discovery in genetic sequence data.☆190Updated 3 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆287Updated 6 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆257Updated 10 months ago
- A tool for estimating repeat sizes☆176Updated 7 months ago
- A flexible framework for rapid genome analysis and interpretation☆312Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆426Updated this week
- Annotation and Ranking of Structural Variation☆210Updated 2 weeks ago
- ☆244Updated last week
- This Snakemake pipeline implements the GATK best-practices workflow☆239Updated last year
- Bayesian haplotype-based mutation calling☆302Updated last year
- An overview of all nanopack tools☆207Updated last year
- Bayesian genotyper for structural variants☆125Updated 3 years ago
- VarDict☆187Updated 8 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆340Updated 2 years ago
- A minimap2 frontend for PacBio native data formats☆170Updated 3 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆187Updated 3 years ago
- Tools for processing and analyzing structural variants.☆147Updated 2 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆226Updated this week