arq5x / lumpy-svLinks
lumpy: a general probabilistic framework for structural variant discovery
☆333Updated 3 years ago
Alternatives and similar repositories for lumpy-sv
Users that are interested in lumpy-sv are comparing it to the libraries listed below
Sorting:
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆270Updated 2 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆225Updated 3 years ago
- A flexible framework for rapid genome analysis and interpretation☆318Updated 2 years ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Toolset for SV simulation, comparison and filtering☆393Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆478Updated last week
- Structural variation and indel detection by local assembly☆247Updated last month
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆320Updated 2 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆256Updated last year
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆211Updated 5 years ago
- Bayesian haplotype-based mutation calling☆314Updated last week
- Structural variant toolkit for VCFs☆367Updated this week
- VarDict☆198Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆271Updated 6 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆255Updated 2 years ago
- ☆284Updated 5 months ago
- Annotation and Ranking of Structural Variation☆262Updated 3 weeks ago
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆161Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆304Updated last year
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆155Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆271Updated last year
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆379Updated last month
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆234Updated 3 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- A structural variation pipeline for short-read sequencing☆191Updated this week
- A tool set for short variant discovery in genetic sequence data.☆200Updated 4 years ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆252Updated last year
- Documentation for the ANNOVAR software☆243Updated last week