lumpy: a general probabilistic framework for structural variant discovery
☆346Feb 22, 2026Updated 6 months ago
Alternatives and similar repositories for lumpy-sv
Users that are interested in lumpy-sv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆536Updated this week
- Bayesian genotyper for structural variants☆137Apr 13, 2026Updated 5 months ago
- Structural variant and indel caller for mapped sequencing data☆467Oct 11, 2025Updated 11 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- Structural variation and indel detection by local assembly☆259Aug 19, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆236Feb 17, 2022Updated 4 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆179Jan 7, 2020Updated 6 years ago
- A flexible framework for rapid genome analysis and interpretation☆320Oct 18, 2022Updated 3 years ago
- Toolset for SV simulation, comparison and filtering☆425Dec 1, 2023Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Structural variation caller using third generation sequencing☆679Sep 10, 2026Updated last week
- Tools for processing and analyzing structural variants.☆158May 2, 2022Updated 4 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆243Aug 11, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆285May 21, 2025Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆178Aug 22, 2024Updated 2 years ago
- Annotation and Ranking of Structural Variation☆310Aug 11, 2026Updated last month
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Long read based human genomic structural variation detection with cuteSV☆293Aug 21, 2026Updated 3 weeks ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆878Sep 3, 2026Updated 2 weeks ago
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- Structural variant toolkit for VCFs☆423Sep 8, 2026Updated last week
- annotate a VCF with other VCFs/BEDs/tabixed files☆403Jun 16, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆685Mar 20, 2026Updated 5 months ago
- Tools for working with SAM/BAM data☆613Dec 22, 2024Updated last year
- SV detection from paired end reads mapping☆118Jul 31, 2019Updated 7 years ago
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 4 months ago
- Population-scale genotyping using pangenome graphs☆202Jan 9, 2025Updated last year
- Graph realignment tools for structural variants☆171Dec 8, 2022Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆207May 4, 2021Updated 5 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆877May 2, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 9 years ago
- ☆51Aug 27, 2019Updated 7 years ago
- The next version of bwa-mem☆861Oct 15, 2025Updated 11 months ago
- TIDDIT - structural variant calling☆80Jul 20, 2026Updated last month
- Copy number variant detection from targeted DNA sequencing☆616Aug 18, 2026Updated last month
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆218Jun 23, 2026Updated 2 months ago
- Sequence-to-graph mapper and graph generator☆488Aug 11, 2025Updated last year