dnanexus-archive / dx-cwl
Import and run CWL workflows on DNAnexus (alpha)
☆13Updated 6 years ago
Alternatives and similar repositories for dx-cwl:
Users that are interested in dx-cwl are comparing it to the libraries listed below
- ☆21Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 2 months ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated 4 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Allele frequency filter app☆14Updated 2 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Gene lists related to cancer immunotherapy☆13Updated 5 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 6 years ago
- ☆12Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Updated 3 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago