dnanexus-archive / dx-cwlLinks
Import and run CWL workflows on DNAnexus (alpha)
☆13Updated 6 years ago
Alternatives and similar repositories for dx-cwl
Users that are interested in dx-cwl are comparing it to the libraries listed below
Sorting:
- ☆22Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- Allele frequency filter app☆14Updated 3 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Updated 7 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- ☆12Updated last year
- Gene lists related to cancer immunotherapy☆13Updated 8 months ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ☆37Updated 4 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Hemang Parikh☆11Updated 9 years ago
- ☆29Updated 4 years ago