lh3 / lh3-snippetsLinks
☆14Updated 5 years ago
Alternatives and similar repositories for lh3-snippets
Users that are interested in lh3-snippets are comparing it to the libraries listed below
Sorting:
- Detects human contamination in bam files☆16Updated 5 years ago
- Pan gGnome Viewer☆10Updated 2 months ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- mreps: software for tandem repeat identification in DNA☆15Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆21Updated 6 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Updated 8 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- SeqOthello supports fast coverage query and containment query.☆12Updated 6 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Recommended Graphtyper pipelines☆15Updated 4 years ago
- reference free variant assembly☆34Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- Python bindings to minimap2☆16Updated 8 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Updated 6 years ago
- De novo genome assembler.☆11Updated 7 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- MEM mapper prototype☆13Updated 4 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- ☆13Updated 8 years ago