reiterlab / treeomicsLinks
Decrypting somatic mutation patterns to reveal the evolution of cancer
☆56Updated 4 years ago
Alternatives and similar repositories for treeomics
Users that are interested in treeomics are comparing it to the libraries listed below
Sorting:
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 5 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- ☆44Updated 7 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- ☆72Updated 2 years ago
- ☆35Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- An R package to time somatic mutations☆65Updated 4 years ago
- Battenberg R package for subclonal copynumber estimation☆92Updated this week
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 8 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Cloud-based single-cell copy-number variation analysis tool☆53Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago