jts / sgaLinks
de novo sequence assembler using string graphs
☆240Updated 6 years ago
Alternatives and similar repositories for sga
Users that are interested in sga are comparing it to the libraries listed below
Sorting:
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆181Updated 6 years ago
- a toolkit for working with Oxford nanopore data☆245Updated 2 years ago
- Reads simulator☆282Updated 4 years ago
- ☆131Updated 2 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆235Updated 4 years ago
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆305Updated last year
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated 10 months ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Updated 8 years ago
- The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.☆218Updated 2 years ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆293Updated 2 weeks ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- VarDict☆198Updated last year
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Updated 3 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆369Updated 3 years ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆182Updated 6 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆340Updated 3 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Quality control for MinION sequencing data☆215Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆146Updated 10 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆277Updated 5 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆240Updated last year
- A minimap2 frontend for PacBio native data formats☆205Updated last month
- A tool to circularize genome assemblies☆248Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆238Updated last year
- A flexible framework for rapid genome analysis and interpretation☆317Updated 3 years ago