jts / sgaLinks
de novo sequence assembler using string graphs
☆242Updated 6 years ago
Alternatives and similar repositories for sga
Users that are interested in sga are comparing it to the libraries listed below
Sorting:
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆181Updated 6 years ago
- Reads simulator☆282Updated 4 years ago
- a toolkit for working with Oxford nanopore data☆245Updated 2 years ago
- A tool set for short variant discovery in genetic sequence data.☆203Updated 4 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆236Updated 4 years ago
- VarDict☆201Updated last year
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated 2 weeks ago
- Count bases in BAM/CRAM files☆320Updated 3 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆334Updated 3 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆372Updated 3 years ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆292Updated last month
- C++ API & command-line toolkit for working with BAM data☆429Updated 6 months ago
- ☆131Updated 2 years ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Updated 8 years ago
- A flexible framework for rapid genome analysis and interpretation☆316Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Updated 3 years ago
- The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.☆218Updated 3 years ago
- Structural variation and indel detection by local assembly☆249Updated 2 months ago
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆212Updated 5 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆344Updated 4 months ago
- Bayesian haplotype-based mutation calling☆321Updated 2 weeks ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆329Updated 6 months ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆280Updated 6 months ago
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago