gt1 / biobambamLinks
Tools for bam file processing
☆55Updated 10 years ago
Alternatives and similar repositories for biobambam
Users that are interested in biobambam are comparing it to the libraries listed below
Sorting:
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- ☆78Updated 11 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Maximum likelihood demultiplexing☆47Updated 7 months ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Fast fusion detection using kallisto☆79Updated 3 months ago
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆33Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago