gt1 / biobambam2
Tools for early stage alignment file processing
☆93Updated 5 years ago
Related projects: ⓘ
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- Read visualizer for structural variants☆80Updated 6 years ago
- An awk-like VCF parser☆54Updated 8 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆94Updated 2 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 3 years ago
- ABRA2☆90Updated last year
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆92Updated 3 months ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated 10 months ago
- Data and information about the Polaris study☆52Updated 4 years ago
- ☆78Updated 10 years ago
- High-performance error correction for Illumina resequencing data☆68Updated 8 years ago
- ☆81Updated 5 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆69Updated 6 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆100Updated 3 years ago
- Microassembly based somatic variant caller for NGS data☆153Updated 2 years ago
- ☆87Updated 2 years ago
- Very simple, pure python, BAM file reader☆79Updated 5 years ago
- ☆58Updated this week
- ☆67Updated 2 years ago
- ☆94Updated this week
- ☆110Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆107Updated 2 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆135Updated 3 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 3 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆78Updated last year
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆132Updated last month
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆47Updated 5 years ago
- NEAT read simulation tools☆95Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago