victoriapascal / gutsmashLinks
gutSMASH
☆55Updated 3 weeks ago
Alternatives and similar repositories for gutsmash
Users that are interested in gutsmash are comparing it to the libraries listed below
Sorting:
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- Analyses in R and Python Using curatedMetagenomicData☆32Updated 2 weeks ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Bioinformatics Tools☆89Updated 3 weeks ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 10 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 4 months ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- ☆32Updated 2 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 9 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- An R package designed for drawing gene arrow maps☆91Updated 3 weeks ago
- ☆40Updated 4 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆47Updated 2 weeks ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆57Updated last year
- ☆79Updated this week
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 4 years ago
- ☆32Updated 9 months ago
- ☆57Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆22Updated 10 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 3 weeks ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago