victoriapascal / gutsmashLinks
gutSMASH
☆57Updated 4 months ago
Alternatives and similar repositories for gutsmash
Users that are interested in gutsmash are comparing it to the libraries listed below
Sorting:
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last week
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆68Updated last year
- An R package designed for drawing gene arrow maps☆95Updated 4 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- Analyses in R and Python Using curatedMetagenomicData☆33Updated 2 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆67Updated this week
- Batch effects removal for microbiome data via conditional quantile regression☆32Updated 3 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 3 years ago
- ☆32Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆67Updated 2 years ago
- ☆32Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- ☆81Updated 2 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated last year
- Bioinformatics Tools☆90Updated last week
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Course material for the metagenomics course☆47Updated 3 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- ☆39Updated 2 years ago
- ☆42Updated 4 years ago
- ☆58Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Woltka: a versatile meta'omic data classifier☆76Updated 5 months ago