gutSMASH
☆59Oct 3, 2025Updated 7 months ago
Alternatives and similar repositories for gutsmash
Users that are interested in gutsmash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆32Jun 12, 2023Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Nov 5, 2025Updated 5 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 3 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆16Nov 7, 2019Updated 6 years ago
- ☆23May 8, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Sample Metadata Curation for curatedMetagenomicData☆31Apr 15, 2026Updated 2 weeks ago
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- MGnify API toolkit☆19Jan 31, 2025Updated last year
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- ☆64Feb 27, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- ☆18Nov 19, 2022Updated 3 years ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 4 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆72Dec 1, 2025Updated 5 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆257Mar 20, 2025Updated last year
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆58Jan 30, 2024Updated 2 years ago
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 6 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CLI tool to annotate genes with KOfam☆94Jun 6, 2023Updated 2 years ago
- antiSMASH☆255Mar 24, 2026Updated last month
- ☆19Dec 11, 2024Updated last year
- MicrobeRX☆17Aug 11, 2025Updated 8 months ago
- Variational autoencoder for metagenomic binning☆322Apr 27, 2026Updated last week
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- ☆40Dec 16, 2023Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python package to study microbial communities using metabolic modeling.☆127Mar 31, 2026Updated last month
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆100Aug 11, 2025Updated 8 months ago
- A shiny package for microbiome functional enrichment analysis☆40Updated this week
- ☆32Jan 27, 2026Updated 3 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆82Apr 24, 2026Updated last week
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week