victoriapascal / gutsmashLinks
gutSMASH
☆57Updated 3 months ago
Alternatives and similar repositories for gutsmash
Users that are interested in gutsmash are comparing it to the libraries listed below
Sorting:
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Updated 3 years ago
- Analyses in R and Python Using curatedMetagenomicData☆33Updated 2 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- An R package designed for drawing gene arrow maps☆95Updated 3 months ago
- Bioinformatics Tools☆90Updated this week
- ☆81Updated last month
- ☆32Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆51Updated 2 months ago
- ☆58Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 11 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 2 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- ☆32Updated 2 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- ☆41Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆22Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆31Updated 2 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated last year
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆38Updated 9 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago