victoriapascal / gutsmash
gutSMASH
☆53Updated 4 months ago
Alternatives and similar repositories for gutsmash
Users that are interested in gutsmash are comparing it to the libraries listed below
Sorting:
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- Analyses in R and Python Using curatedMetagenomicData☆31Updated last month
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆35Updated last month
- ☆70Updated last week
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆30Updated 2 years ago
- ☆29Updated 4 months ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 7 months ago
- An R package designed for drawing gene arrow maps☆77Updated 2 weeks ago
- ☆17Updated 2 years ago
- ☆32Updated last year
- A microbiome analysis toolkit for R☆22Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 7 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆28Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- ☆41Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆65Updated 6 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆33Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆58Updated 8 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- SHallow shOtGUN profiler☆53Updated 3 years ago