Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA
☆13Jul 25, 2024Updated last year
Alternatives and similar repositories for stamps2024
Users that are interested in stamps2024 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 2025 RAD microbes boot camp☆17Apr 9, 2026Updated 3 months ago
- ☆19Mar 8, 2026Updated 4 months ago
- Species richness with high diversity☆68Jun 25, 2026Updated 3 weeks ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 5 months ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A DRAFT, early stage book on snakemake.☆23Nov 1, 2023Updated 2 years ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated last month
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆49Jun 30, 2026Updated 2 weeks ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆16Jul 2, 2026Updated 2 weeks ago
- QC cutoffs for different genomes.☆17May 28, 2026Updated last month
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆53Jul 10, 2026Updated last week
- STAMPS 2018 course☆14Aug 8, 2018Updated 7 years ago
- Metagenomic classification of long-read sequencing data☆107Jan 22, 2026Updated 5 months ago
- A simple script to calculate q20/q30 percentages of a fastq file (can be gzipped)☆14Aug 31, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Count Regression for Correlated Observations with the Beta-binomial☆108Nov 13, 2025Updated 8 months ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆84Jun 25, 2026Updated 3 weeks ago
- An algorithm for clustering metagenomic sequences.☆43Dec 12, 2025Updated 7 months ago
- ☆18Nov 19, 2024Updated last year
- Finding regions of similarity between plasmids☆17Updated this week
- ☆17Updated this week
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆77Jul 13, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆33Updated this week
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)☆29Jul 13, 2026Updated last week
- MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data☆19Mar 3, 2025Updated last year
- A simple pipeline for bacterial assembly and quality control☆16Updated this week
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆129Jan 8, 2026Updated 6 months ago
- ☆26Oct 9, 2020Updated 5 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆28Feb 6, 2023Updated 3 years ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆20Mar 25, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An Engine for Running Simulations☆52May 22, 2023Updated 3 years ago
- Pan-Genomic Matching Statistics☆57Apr 3, 2024Updated 2 years ago
- The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information req…☆25Jul 11, 2026Updated last week
- Harmonization of AMR predictor tool outputs☆25Jan 14, 2025Updated last year
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 6 months ago
- Repository for general metagenomics Nextflow pipeline☆27Mar 23, 2026Updated 3 months ago
- A data analysis package for high-dimensional, multi-block data.☆12Jan 13, 2022Updated 4 years ago