mblstamps / stamps2024Links
Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA
☆13Updated last year
Alternatives and similar repositories for stamps2024
Users that are interested in stamps2024 are comparing it to the libraries listed below
Sorting:
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated last month
- Working with the outputs of sourmash in R☆27Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆32Updated 4 months ago
- BEAV: Bacterial Element Annotation reVamped☆68Updated 2 weeks ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆43Updated 2 weeks ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Updated 6 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆39Updated last month
- ☆55Updated last week
- 🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations☆16Updated 3 weeks ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆24Updated this week
- ☆17Updated this week
- MAGScoT - a MAG scoring and refinement tool☆36Updated 10 months ago
- ☆27Updated 7 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆29Updated 10 months ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆45Updated this week
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated 11 months ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆23Updated 3 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago
- ☆40Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Discover and annotate the virome☆49Updated last week