mblstamps / stamps2024
Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA
☆11Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for stamps2024
- ☆50Updated 2 weeks ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆10Updated 6 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆26Updated 3 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆12Updated this week
- Speedy versions of phyloseq functions☆46Updated 6 months ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie l…☆12Updated last week
- Working with the outputs of sourmash in R☆25Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆28Updated 3 months ago
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated 11 months ago
- ☆13Updated this week
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- functions for analyzing phyloseq data☆26Updated 2 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆69Updated 2 years ago
- ☆17Updated last year
- ☆45Updated 7 months ago
- Dissimilarity Overlap Curve analysis☆11Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 4 years ago
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- Interpretative standards for AMR genotypes☆14Updated 3 months ago
- ☆15Updated last year
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated last month
- dada2 formatted nifH database☆11Updated 5 months ago
- Plot microbiome time series in parallel☆24Updated last year
- A set of R scripts for the analysis of microbial profiles☆40Updated 5 months ago
- A microbiome analysis toolkit for R☆20Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago