☆32Jan 4, 2025Updated last year
Alternatives and similar repositories for SCRuB
Users that are interested in SCRuB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆27Mar 19, 2026Updated last week
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆36Apr 25, 2022Updated 3 years ago
- ☆15Jun 26, 2025Updated 9 months ago
- ☆23Feb 7, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆19May 11, 2022Updated 3 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 6 months ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Nov 24, 2025Updated 4 months ago
- SourceTracker2☆86Jul 10, 2024Updated last year
- gutSMASH☆58Oct 3, 2025Updated 5 months ago
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆75Mar 7, 2026Updated 3 weeks ago
- ☆57Mar 17, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fit LOg-RAtio Lasso regression for compositional covariates☆15Feb 8, 2026Updated last month
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature …☆25Jan 20, 2025Updated last year
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆16Nov 7, 2019Updated 6 years ago
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- Programs and documentation for the SAMSA pipeline, version 1.0☆16Dec 16, 2019Updated 6 years ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Mar 20, 2026Updated last week
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆16Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- A QIIME 2 implementation of SMURF☆13Apr 27, 2022Updated 3 years ago
- Umbrella documentation project for Nextstrain☆18Mar 17, 2026Updated last week
- Gene copy number prediction from k-mer frequencies☆15Jul 29, 2024Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Feb 6, 2023Updated 3 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆40Jan 29, 2026Updated 2 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Feb 9, 2022Updated 4 years ago
- sensitive and precise assembly of short sequencing reads☆163Oct 11, 2024Updated last year
- Pan-cancer mycobiome atlas☆31Oct 7, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Oct 16, 2024Updated last year
- ☆20Feb 4, 2026Updated last month
- This repository contains training material developed by the Microbial Ecology Group to introduce researchers to the R programming languag…☆11Aug 9, 2021Updated 4 years ago
- ☆12Oct 19, 2024Updated last year
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆37Feb 17, 2026Updated last month
- Open-source usearch☆133Aug 19, 2025Updated 7 months ago