Shenhav-and-Korem-labs / SCRuBLinks
☆30Updated 6 months ago
Alternatives and similar repositories for SCRuB
Users that are interested in SCRuB are comparing it to the libraries listed below
Sorting:
- Plot microbiome time series in parallel☆26Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 5 years ago
- Discover and annotate the virome☆44Updated 2 weeks ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆22Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆59Updated last year
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- ☆56Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 5 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆38Updated last week
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆61Updated 10 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆41Updated 4 years ago
- Scalable creating/updating of metagenome profiling databases☆61Updated 3 weeks ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 8 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆32Updated 11 months ago
- Qiime2 snakemake pipeline☆18Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 9 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago