Shenhav-and-Korem-labs / SCRuB
☆25Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for SCRuB
- ☆30Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- ☆18Updated 2 months ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- Gene-flank analysis tool☆26Updated 6 months ago
- ☆21Updated 4 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- A shiny package for microbiome functional enrichment analysis☆36Updated last week
- ☆56Updated last month
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 7 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated this week
- OPAL: Open-community Profiling Assessment tooL☆27Updated 2 months ago
- ☆45Updated 6 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆22Updated 3 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- HoCoRT - Remove specific organisms from sequencing reads☆15Updated last year
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆22Updated 2 weeks ago
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year
- IslandPath standalone software☆31Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆17Updated 7 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆12Updated this week
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated last year
- scripts for microbiome analysis☆11Updated 3 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆19Updated 3 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago