bacpop / CELEBRIMBORLinks
Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
☆25Updated last year
Alternatives and similar repositories for CELEBRIMBOR
Users that are interested in CELEBRIMBOR are comparing it to the libraries listed below
Sorting:
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 7 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- MAG Circularization Method☆32Updated 2 weeks ago
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆67Updated this week
- ☆28Updated 9 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Discover and annotate the virome☆53Updated last month
- Calculate assocations between genes and traits☆29Updated 8 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 8 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 6 months ago
- ☆24Updated 9 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated last week
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 8 months ago
- Recombination-free trees☆60Updated 2 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago