bacpop / CELEBRIMBORLinks
Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
☆26Updated last year
Alternatives and similar repositories for CELEBRIMBOR
Users that are interested in CELEBRIMBOR are comparing it to the libraries listed below
Sorting:
- Calculate assocations between genes and traits☆29Updated 11 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 10 months ago
- MAG Circularization Method☆32Updated 3 months ago
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 10 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 9 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 9 months ago
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Discover and annotate the virome☆58Updated this week
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆35Updated last month
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- ☆25Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Updated 3 years ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆30Updated 3 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 10 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Updated 10 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Updated this week
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated last year