Python package to study microbial communities using metabolic modeling.
☆128Mar 31, 2026Updated last month
Alternatives and similar repositories for micom
Users that are interested in micom are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SMETANA: a tool to analyse interactions in microbial communities☆70May 6, 2025Updated last year
- CarveMe: genome-scale metabolic model reconstruction☆204Sep 12, 2025Updated 8 months ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆262May 13, 2026Updated last week
- From annotated genomes to metabolic screening in large scale microbiotas☆72Apr 27, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- agent based modelling☆37Aug 28, 2024Updated last year
- ☆10Jul 4, 2019Updated 6 years ago
- memote – the genome-scale metabolic model test suite☆146Aug 14, 2025Updated 9 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆213May 7, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- ReFramed: metabolic modeling package☆63May 4, 2026Updated 2 weeks ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 5 years ago
- http://huttenhower.sph.harvard.edu/waafle☆24Feb 26, 2026Updated 2 months ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Oct 21, 2022Updated 3 years ago
- Computation of Microbial Ecosystems in Time and Space☆27May 5, 2026Updated 2 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆100Aug 11, 2025Updated 9 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆83Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆226Mar 24, 2026Updated last month
- COBRApy is a package for constraint-based modeling of metabolic networks.☆560Apr 8, 2026Updated last month
- Analysis of ensembles of metabolic network reconstructions☆22Feb 9, 2026Updated 3 months ago
- A Qiime plugin for MICOM.☆10Apr 27, 2026Updated 3 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Apr 29, 2026Updated 2 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆263Mar 20, 2025Updated last year
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 9 months ago
- diversity estimation under ecological networks☆83Jul 29, 2025Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes