Modeling strain-level variation by gene, phylogeny, or pathway
☆14Aug 6, 2026Updated last month
Alternatives and similar repositories for anpan
Users that are interested in anpan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆20Mar 17, 2021Updated 5 years ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated 3 months ago
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆18Jun 16, 2026Updated 3 months ago
- CroCoDeEL detects cross-sample contamination in shotgun metagenomic data☆32Sep 8, 2026Updated 2 weeks ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆21May 11, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 3 months ago
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆43Updated this week
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 6 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- ☆27Jun 20, 2023Updated 3 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆144Updated this week
- Bioinformatics program inStrain☆193Mar 12, 2026Updated 6 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Public repository for cFMD - curatedFoodMetagenomicData☆39Jun 18, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- A comprehensive prokaryotic genome annotation pipeline☆93Sep 4, 2026Updated 2 weeks ago
- ☆24Dec 5, 2018Updated 7 years ago
- Python package to study microbial communities using metabolic modeling.☆136Updated this week
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- Batch effects removal for microbiome data via conditional quantile regression☆33Aug 23, 2022Updated 4 years ago
- Bacterial GWAS analysis☆58Jun 12, 2026Updated 3 months ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- Discovery of conserved gene clusters in multiple genomes☆135Aug 21, 2026Updated last month
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆171Jun 10, 2026Updated 3 months ago
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- ☆10Sep 27, 2022Updated 3 years ago
- Draggable regression points in R Shiny☆21Jun 15, 2020Updated 6 years ago
- Tumor type classifier using cancer genomic panel sequencing data☆14Mar 12, 2024Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆13Updated this week
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆94May 11, 2026Updated 4 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆47Oct 3, 2023Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆86Sep 15, 2026Updated last week
- ☆32Jun 12, 2023Updated 3 years ago
- Pan-Genome Analysis Pipeline☆37Aug 6, 2026Updated last month
- Tutorial repository for the official MOTOR release☆15Feb 22, 2025Updated last year