☆13May 31, 2026Updated last week
Alternatives and similar repositories for anpan
Users that are interested in anpan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆19Mar 17, 2021Updated 5 years ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 3, 2026Updated last week
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆29May 26, 2026Updated 2 weeks ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 9 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆83May 13, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆27Jun 20, 2023Updated 2 years ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 5 years ago
- Bioinformatics program inStrain☆188Mar 12, 2026Updated 3 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆136Apr 27, 2026Updated last month
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 8 months ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆27Jul 22, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A comprehensive prokaryotic genome annotation pipeline☆87Jun 3, 2026Updated last week
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24May 27, 2026Updated 2 weeks ago
- ☆24Dec 5, 2018Updated 7 years ago
- Python package to study microbial communities using metabolic modeling.☆129Updated this week
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆38Updated this week
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆34Aug 23, 2022Updated 3 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆167Feb 13, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆17Mar 26, 2025Updated last year
- Gene tree - species tree reconciliation from gene tree distributions☆41Apr 30, 2026Updated last month
- Public repository for cFMD - curatedFoodMetagenomicData☆35Updated this week
- ☆10Sep 27, 2022Updated 3 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 3 years ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆90May 11, 2026Updated last month
- MicrobeRX☆17Aug 11, 2025Updated 10 months ago
- Draggable regression points in R Shiny☆21Jun 15, 2020Updated 5 years ago
- ☆13Aug 15, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tumor type classifier using cancer genomic panel sequencing data☆13Mar 12, 2024Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆47Oct 3, 2023Updated 2 years ago
- ☆32Jun 12, 2023Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆57May 24, 2026Updated 2 weeks ago
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆44Apr 8, 2024Updated 2 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆12Mar 3, 2025Updated last year