biobakery / waafleLinks
http://huttenhower.sph.harvard.edu/waafle
☆18Updated 6 months ago
Alternatives and similar repositories for waafle
Users that are interested in waafle are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- Prophage Activity Estimator☆26Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 6 months ago
- ☆13Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆13Updated 7 years ago
- scripts for microbiome analysis☆11Updated 11 months ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10Updated last year
- ☆21Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Population genomics from metagenomes☆11Updated 9 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆13Updated 11 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆16Updated 3 years ago
- ☆15Updated 2 years ago
- ☆18Updated 3 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 8 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- MAG Circularization Method☆33Updated 3 years ago
- ☆16Updated last month
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago