Alternatives and similar repositories for waafle:

Users that are interested in waafle are comparing it to the libraries listed below

• AlexanderLabWHOI / EukHeist
  ☆25Updated last year
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated 8 months ago
• EnvGen / POGENOM
  Population genomics from metagenomes
  ☆11Updated 7 months ago
• mgabriell1 / EUKsemble
  Pipeline for identification of eukaryotic contigs in metagenomic assemblies
  ☆12Updated last year
• wbazant / CORRAL
  ☆13Updated last year
• NancyZxll / temperate-phage-active-prophage-detection
  detect temperate phage (active prophage) in assembled bacterial genome sequences
  ☆14Updated 3 years ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆33Updated 3 years ago
• michaelkyu / MobMess
  ☆19Updated 3 years ago
• pereiramemo / AGS-and-ACN-tools
  Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data
  ☆14Updated 4 months ago
• Arkadiy-Garber / MagicLamp
  A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
  ☆13Updated 9 months ago
• chg60 / DEPhT
  Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences
  ☆20Updated 4 months ago
• ZhenyanZhang / ARG-global
  Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…
  ☆16Updated 3 years ago
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆18Updated 2 years ago
• valflanza / accnet
  ☆13Updated 7 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 10 months ago
• timghaly / EcoFoldDB
  Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
  ☆11Updated 2 weeks ago
• gcremers / metascan
  Metabolic scanning and annotation of Metagenomes
  ☆10Updated last month
• ericcapo / marky-coco
  Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes
  ☆10Updated 11 months ago
• mtisza1 / DNA_methylase_finder
  Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
  ☆11Updated 10 months ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• apcamargo / magpurify2
  Identify and remove contaminants from metagenome-assembled genomes
  ☆18Updated last year
• KoslickiLab / fmh-funprofiler
  A functional profiler for metagenomes using FracMinHash
  ☆16Updated 2 months ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• cmmr / Marker-MAGu
  Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
  ☆19Updated last year
• KIT-IBG-5 / mdmcleaner
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
  ☆24Updated 2 years ago
• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22Updated last year
• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆31Updated 2 years ago
• wanyuac / GeneMates
  An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
  ☆25Updated 2 years ago
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆44Updated last month
• lauriebelch / SOCfinder
  ☆16Updated 4 months ago