http://huttenhower.sph.harvard.edu/waafle
☆24Jun 16, 2026Updated last month
Alternatives and similar repositories for waafle
Users that are interested in waafle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆36Apr 15, 2024Updated 2 years ago
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆31Jun 22, 2026Updated last month
- ☆22Sep 19, 2025Updated 10 months ago
- Modeling strain-level variation by gene, phylogeny, or pathway☆13Updated this week
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pan-Genome Analysis Pipeline☆35Jun 30, 2026Updated 3 weeks ago
- From annotated genomes to metabolic screening in large scale microbiotas☆76May 26, 2026Updated 2 months ago
- ☆19Nov 11, 2024Updated last year
- This is an R package for element cycle analysis using metagenomic data.☆48Feb 2, 2026Updated 5 months ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆27Mar 23, 2026Updated 4 months ago
- Python package to study microbial communities using metabolic modeling.☆134Updated this week
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆41Updated this week
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆19Feb 18, 2026Updated 5 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆77Updated this week
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- Nextflow pipeline for the analysis of metagenomic short reads.☆24Jul 3, 2026Updated 3 weeks ago
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆58Apr 30, 2026Updated 2 months ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- ☆23Jan 6, 2026Updated 6 months ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 6 months ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated 3 months ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆18Oct 23, 2025Updated 9 months ago
- ☆51May 29, 2026Updated last month
- Transform files to the microtable object with microeco package☆29May 29, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- code repo for mobileOG-db☆49Nov 6, 2025Updated 8 months ago
- Bioinformatics program inStrain☆191Mar 12, 2026Updated 4 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.☆35Jul 30, 2019Updated 6 years ago
- ☆15Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆272Mar 20, 2025Updated last year
- This is a repository for draft versions of a book called Meta-Analysis of Ecological Data in R (MaEDR)☆12Jul 28, 2022Updated 3 years ago