biobakery / waafleLinks
http://huttenhower.sph.harvard.edu/waafle
☆19Updated 7 months ago
Alternatives and similar repositories for waafle
Users that are interested in waafle are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- scripts for microbiome analysis☆11Updated last year
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆17Updated 3 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆20Updated 9 months ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10Updated last year
- ☆13Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆22Updated 2 months ago
- ☆16Updated 2 years ago
- KEGG Module Evaluation Tool☆30Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- MAG Circularization Method☆33Updated 3 years ago
- ☆17Updated 9 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- Population genomics from metagenomes☆12Updated 11 months ago
- ☆13Updated 7 years ago
- ☆18Updated 3 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated last week
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 7 months ago
- ☆21Updated 3 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆14Updated 7 months ago
- Prophage Activity Estimator☆26Updated last year
- ☆19Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year