biobakery / waafle
http://huttenhower.sph.harvard.edu/waafle
☆11Updated 3 months ago
Alternatives and similar repositories for waafle:
Users that are interested in waafle are comparing it to the libraries listed below
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- ☆25Updated last year
- Population genomics from metagenomes☆11Updated 6 months ago
- scripts for microbiome analysis☆11Updated 7 months ago
- Metabolic scanning and annotation of Metagenomes☆10Updated this week
- ☆19Updated 3 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆13Updated 8 months ago
- ☆13Updated 7 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- cognac: COre GeNe Alignment Concatenation☆9Updated 3 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 4 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 3 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Dadaist2 🟨 Highway to R☆13Updated 2 weeks ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- ☆13Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- A functional profiler for metagenomes using FracMinHash☆16Updated last month
- ☆15Updated last year
- Prophage Activity Estimator☆26Updated 9 months ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆14Updated 3 months ago