Russel88 / MAGinator
MAGinator - Accurate SNV calling and profiling of MAGs
☆18Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for MAGinator
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated 2 weeks ago
- ☆18Updated 2 years ago
- Bacterial GWAS analysis☆32Updated last month
- ☆23Updated last year
- ☆14Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated 3 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- KEGG Module Evaluation Tool☆26Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 4 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆29Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- scripts for microbiome analysis☆11Updated 3 months ago
- ☆12Updated 7 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆17Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆28Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆19Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 weeks ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 3 weeks ago
- MAGScoT - a MAG scoring and refinement tool☆28Updated last month
- ☆45Updated 7 months ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- Dadaist2 🟨 Highway to R☆13Updated 9 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated last week
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago