Russel88 / MAGinatorLinks
MAGinator - Accurate SNV calling and profiling of MAGs
☆26Updated 8 months ago
Alternatives and similar repositories for MAGinator
Users that are interested in MAGinator are comparing it to the libraries listed below
Sorting:
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- http://huttenhower.sph.harvard.edu/waafle☆22Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 10 months ago
- MAG Circularization Method☆32Updated 3 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- scripts for microbiome analysis☆11Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆25Updated 6 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 4 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 4 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆35Updated last month
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆71Updated this week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week
- Discover and annotate the virome☆58Updated last week
- ☆13Updated 8 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- ☆26Updated 2 years ago
- Unified Human Gut Virome Catalog☆41Updated 3 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- ☆45Updated 2 years ago