wdl2459 / ConQuRLinks
Batch effects removal for microbiome data via conditional quantile regression
☆32Updated 3 years ago
Alternatives and similar repositories for ConQuR
Users that are interested in ConQuR are comparing it to the libraries listed below
Sorting:
- gutSMASH☆55Updated 2 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- A general metagenomics data mining system focus on robust microbiome research☆59Updated last year
- A shiny package for microbiome functional enrichment analysis☆38Updated last week
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- ☆32Updated 2 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 11 months ago
- A microbiome analysis toolkit for R☆25Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆50Updated last month
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- ☆38Updated 2 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆34Updated 4 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆22Updated last year
- ☆58Updated last year
- R package to predict microbial loads☆17Updated 3 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- ☆32Updated 11 months ago
- ☆24Updated 5 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 5 months ago
- ☆13Updated last year
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 11 months ago
- Analyses in R and Python Using curatedMetagenomicData☆33Updated last month
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- ☆22Updated last month
- R implementation of the LEfSe method☆63Updated last month