Batch effects removal for microbiome data via conditional quantile regression
☆34Aug 23, 2022Updated 3 years ago
Alternatives and similar repositories for ConQuR
Users that are interested in ConQuR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆15Nov 26, 2023Updated 2 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- ☆15Jun 26, 2025Updated 11 months ago
- gutSMASH☆60Oct 3, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bioinformatics program inStrain☆188Mar 12, 2026Updated 3 months ago
- ☆13Jun 6, 2024Updated 2 years ago
- ☆17Feb 3, 2023Updated 3 years ago
- ☆64Feb 27, 2024Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆16Mar 17, 2023Updated 3 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 5 years ago
- ☆32Jun 12, 2023Updated 3 years ago
- R package to predict microbial loads☆19Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.☆15Jan 6, 2026Updated 5 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 11 months ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- Multi-omics multi-layered network integration and interpretation☆14Oct 15, 2024Updated last year
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated 3 months ago
- ☆18Nov 19, 2022Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- ☆13May 31, 2026Updated 2 weeks ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆37Jun 24, 2021Updated 4 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- Code and analysis results for the CRC shotgun meta-analysis☆40Sep 28, 2022Updated 3 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆267Mar 20, 2025Updated last year
- Microbial marker identification from cross-cohort datasets☆14May 15, 2024Updated 2 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆44Apr 8, 2024Updated 2 years ago
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆92Sep 3, 2024Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆57May 24, 2026Updated 3 weeks ago
- Deep representation learning for disease prediction based on microbiome data☆63Apr 21, 2023Updated 3 years ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- The code for running the analysis component of CSI-Microbe☆11Jan 3, 2024Updated 2 years ago
- A logistic regression model for testing differential abundance in compositional microbiome data☆13Jul 25, 2023Updated 2 years ago
- ☆77Mar 10, 2024Updated 2 years ago